Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
COL7A1Q02388 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC12.57□□□□□ -0.4
COL7A1Q02388 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
COL7A1Q02388 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 AC079776.1-201ENST00000401540 1152 ntBASIC12.57□□□□□ -0.4
COL7A1Q02388 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.57□□□□□ -0.4
COL7A1Q02388 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 ATP5G2P4-201ENST00000442175 420 ntBASIC12.57□□□□□ -0.4
COL7A1Q02388 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.57□□□□□ -0.4
COL7A1Q02388 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC12.57□□□□□ -0.4
COL7A1Q02388 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC12.57□□□□□ -0.4
COL7A1Q02388 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC12.56□□□□□ -0.4
COL7A1Q02388 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC12.56□□□□□ -0.4
COL7A1Q02388 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 AL592309.1-201ENST00000443127 649 ntBASIC12.56□□□□□ -0.4
COL7A1Q02388 AC097493.3-201ENST00000509725 367 ntBASIC12.56□□□□□ -0.4
COL7A1Q02388 HILS1-202ENST00000545329 423 ntBASIC12.56□□□□□ -0.4
COL7A1Q02388 IFT20-216ENST00000588477 774 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 AC116407.2-201ENST00000613639 860 ntBASIC12.56□□□□□ -0.4
COL7A1Q02388 AL358472.5-202ENST00000641448 1267 ntBASIC12.56□□□□□ -0.4
COL7A1Q02388 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
COL7A1Q02388 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 PTGES2-AS1-201ENST00000443493 2100 ntBASIC12.56□□□□□ -0.4
COL7A1Q02388 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 MIR1909-201ENST00000411312 80 ntBASIC12.56□□□□□ -0.4
COL7A1Q02388 COX5BP8-201ENST00000416911 349 ntBASIC12.56□□□□□ -0.4
COL7A1Q02388 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC12.56□□□□□ -0.4
COL7A1Q02388 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.56□□□□□ -0.4
COL7A1Q02388 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
COL7A1Q02388 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL7A1Q02388 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 SNCG-201ENST00000348795 684 ntTSL 2 BASIC12.55□□□□□ -0.4
COL7A1Q02388 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
COL7A1Q02388 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
COL7A1Q02388 TREML5P-201ENST00000421694 576 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC12.55□□□□□ -0.4
COL7A1Q02388 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC12.55□□□□□ -0.4
COL7A1Q02388 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC12.55□□□□□ -0.4
COL7A1Q02388 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC12.55□□□□□ -0.4
COL7A1Q02388 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
COL7A1Q02388 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
COL7A1Q02388 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC12.55□□□□□ -0.4
COL7A1Q02388 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 AC107890.1-201ENST00000422478 521 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC12.55□□□□□ -0.4
COL7A1Q02388 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
COL7A1Q02388 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12.55□□□□□ -0.4
COL7A1Q02388 GGTLC5P-201ENST00000617623 998 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 AC084121.4-201ENST00000641598 221 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 AF228730.8-201ENST00000642140 221 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC12.55□□□□□ -0.4
COL7A1Q02388 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 AC009949.1-201ENST00000623048 1830 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL7A1Q02388 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms