Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.76■□□□□ 0.43
SHOX2O60902 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.76■□□□□ 0.43
SHOX2O60902 AC098934.4-201ENST00000564127 592 ntBASIC17.76■□□□□ 0.43
SHOX2O60902 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.76■□□□□ 0.43
SHOX2O60902 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SHOX2O60902 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHOX2O60902 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.75■□□□□ 0.43
SHOX2O60902 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.75■□□□□ 0.43
SHOX2O60902 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.75■□□□□ 0.43
SHOX2O60902 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.75■□□□□ 0.43
SHOX2O60902 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.75■□□□□ 0.43
SHOX2O60902 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SHOX2O60902 AC092053.1-201ENST00000605787 1936 ntBASIC17.75■□□□□ 0.43
SHOX2O60902 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.75■□□□□ 0.43
SHOX2O60902 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 SLC29A4P1-201ENST00000398760 971 ntBASIC17.75■□□□□ 0.43
SHOX2O60902 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.75■□□□□ 0.43
SHOX2O60902 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.75■□□□□ 0.43
SHOX2O60902 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.75■□□□□ 0.43
SHOX2O60902 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.75■□□□□ 0.43
SHOX2O60902 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.75■□□□□ 0.43
SHOX2O60902 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.75■□□□□ 0.43
SHOX2O60902 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.75■□□□□ 0.43
SHOX2O60902 AC008622.2-201ENST00000617006 1229 ntBASIC17.75■□□□□ 0.43
SHOX2O60902 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.75■□□□□ 0.43
SHOX2O60902 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SHOX2O60902 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.75■□□□□ 0.43
SHOX2O60902 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.75■□□□□ 0.43
SHOX2O60902 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHOX2O60902 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
SHOX2O60902 AC009949.1-201ENST00000623048 1830 ntBASIC17.75■□□□□ 0.43
SHOX2O60902 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SHOX2O60902 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SHOX2O60902 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.74■□□□□ 0.43
SHOX2O60902 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SHOX2O60902 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.74■□□□□ 0.43
SHOX2O60902 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.74■□□□□ 0.43
SHOX2O60902 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.74■□□□□ 0.43
SHOX2O60902 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.74■□□□□ 0.43
SHOX2O60902 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.74■□□□□ 0.43
SHOX2O60902 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.74■□□□□ 0.43
SHOX2O60902 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.74■□□□□ 0.43
SHOX2O60902 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.74■□□□□ 0.43
SHOX2O60902 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SHOX2O60902 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHOX2O60902 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SHOX2O60902 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHOX2O60902 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHOX2O60902 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.73■□□□□ 0.43
SHOX2O60902 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHOX2O60902 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SHOX2O60902 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHOX2O60902 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.73■□□□□ 0.43
SHOX2O60902 AC144831.1-201ENST00000573312 2656 ntBASIC17.73■□□□□ 0.43
SHOX2O60902 AC092364.2-201ENST00000596710 2692 ntBASIC17.73■□□□□ 0.43
SHOX2O60902 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SHOX2O60902 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHOX2O60902 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.73■□□□□ 0.43
SHOX2O60902 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SHOX2O60902 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.73■□□□□ 0.43
SHOX2O60902 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SHOX2O60902 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms