Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC126763.1-201ENST00000552015 2118 ntBASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TMX2-CTNND1H3BSU7 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC091607.1-201ENST00000490318 1060 ntBASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.43■□□□□ 0.38
TMX2-CTNND1H3BSU7 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 RPS2P28-201ENST00000314255 741 ntBASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 SCARNA2-201ENST00000458748 420 ntBASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC009533.2-201ENST00000543664 586 ntBASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 MTMR9LP-203ENST00000426597 1545 ntBASIC17.42■□□□□ 0.38
TMX2-CTNND1H3BSU7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 BCL2-203ENST00000589955 5011 ntBASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms