Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.39■□□□□ 0.22
CPSF4LA6NMK7 LINC00304-203ENST00000565008 1864 ntBASIC16.39■□□□□ 0.22
CPSF4LA6NMK7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 AL136038.4-201ENST00000603606 1261 ntBASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 AL391807.1-203ENST00000604392 2365 ntBASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPSF4LA6NMK7 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 PCDHA12-202ENST00000613593 2588 ntBASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 AC066615.1-201ENST00000640911 628 ntBASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 CROCCP2-202ENST00000412962 2773 ntBASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 AL138688.1-201ENST00000624851 1594 ntBASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPSF4LA6NMK7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 PRORSD1P-202ENST00000563365 2154 ntBASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 FER1L4-210ENST00000615531 5998 ntBASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 KRT18P65-201ENST00000439811 1286 ntBASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 COX11P1-201ENST00000489116 835 ntBASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 AL441883.1-201ENST00000566170 1045 ntBASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms