Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 SLC25A1P2-201ENST00000430693 912 ntBASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 AP005242.2-201ENST00000580065 1175 ntBASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
NUDCD3Q8IVD9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 REXO1L11P-201ENST00000620964 1927 ntBASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 AC009949.1-201ENST00000623048 1830 ntBASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUDCD3Q8IVD9 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.64■□□□□ 0.42
NUDCD3Q8IVD9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
NUDCD3Q8IVD9 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
NUDCD3Q8IVD9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 AC008687.5-201ENST00000593746 558 ntBASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 AC106886.4-201ENST00000623557 2502 ntBASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUDCD3Q8IVD9 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.63■□□□□ 0.41
NUDCD3Q8IVD9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUDCD3Q8IVD9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.63■□□□□ 0.41
NUDCD3Q8IVD9 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUDCD3Q8IVD9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms