Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LHX1P48742 AF186996.4-201ENST00000467186 377 ntBASIC18.78■□□□□ 0.6
LHX1P48742 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.78■□□□□ 0.6
LHX1P48742 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
LHX1P48742 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.78■□□□□ 0.6
LHX1P48742 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.78■□□□□ 0.6
LHX1P48742 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.77■□□□□ 0.6
LHX1P48742 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 KRT18P67-201ENST00000432816 1264 ntBASIC18.77■□□□□ 0.6
LHX1P48742 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.77■□□□□ 0.6
LHX1P48742 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.77■□□□□ 0.6
LHX1P48742 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.77■□□□□ 0.6
LHX1P48742 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.77■□□□□ 0.6
LHX1P48742 AC073648.2-201ENST00000510116 352 ntBASIC18.77■□□□□ 0.6
LHX1P48742 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.77■□□□□ 0.6
LHX1P48742 SLC25A6P4-201ENST00000586535 553 ntBASIC18.77■□□□□ 0.6
LHX1P48742 AC019129.2-201ENST00000609837 1235 ntBASIC18.77■□□□□ 0.6
LHX1P48742 AC073592.5-201ENST00000624854 528 ntBASIC18.77■□□□□ 0.6
LHX1P48742 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.77■□□□□ 0.6
LHX1P48742 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.77■□□□□ 0.6
LHX1P48742 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 AL390961.4-201ENST00000623958 2535 ntBASIC18.77■□□□□ 0.6
LHX1P48742 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
LHX1P48742 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.77■□□□□ 0.6
LHX1P48742 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LHX1P48742 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
LHX1P48742 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LHX1P48742 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LHX1P48742 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.76■□□□□ 0.59
LHX1P48742 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.76■□□□□ 0.59
LHX1P48742 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 AC079776.2-201ENST00000641154 1609 ntBASIC18.76■□□□□ 0.59
LHX1P48742 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.76■□□□□ 0.59
LHX1P48742 MRPL3P1-201ENST00000400109 1033 ntBASIC18.76■□□□□ 0.59
LHX1P48742 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
LHX1P48742 AC002558.1-201ENST00000488906 803 ntBASIC18.76■□□□□ 0.59
LHX1P48742 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.76■□□□□ 0.59
LHX1P48742 IGHV3-52-201ENST00000519770 353 ntBASIC18.76■□□□□ 0.59
LHX1P48742 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LHX1P48742 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.76■□□□□ 0.59
LHX1P48742 AC109462.3-201ENST00000573934 613 ntBASIC18.76■□□□□ 0.59
LHX1P48742 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.76■□□□□ 0.59
LHX1P48742 AC073592.4-201ENST00000623827 446 ntBASIC18.76■□□□□ 0.59
LHX1P48742 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.76■□□□□ 0.59
LHX1P48742 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LHX1P48742 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.76■□□□□ 0.59
LHX1P48742 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.75■□□□□ 0.59
LHX1P48742 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LHX1P48742 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LHX1P48742 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms