Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 LINC00304-203ENST00000565008 1864 ntBASIC17.12■□□□□ 0.33
VPS33AQ96AX1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 AC116562.4-202ENST00000641738 218 ntBASIC17.12■□□□□ 0.33
VPS33AQ96AX1 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS33AQ96AX1 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 SEC1P-202ENST00000473944 940 ntBASIC17.11■□□□□ 0.33
VPS33AQ96AX1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS33AQ96AX1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 TSPY7P-201ENST00000431358 1114 ntBASIC17.1■□□□□ 0.33
VPS33AQ96AX1 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 FITM1-202ENST00000559294 800 ntBASIC17.1■□□□□ 0.33
VPS33AQ96AX1 AC024243.1-201ENST00000609234 778 ntBASIC17.1■□□□□ 0.33
VPS33AQ96AX1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
VPS33AQ96AX1 LINC00167-201ENST00000530583 1419 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms