Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
BRF1Q92994 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.93■□□□□ 0.94
BRF1Q92994 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.93■□□□□ 0.94
BRF1Q92994 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.93■□□□□ 0.94
BRF1Q92994 GUSBP12-201ENST00000513727 720 ntBASIC20.93■□□□□ 0.94
BRF1Q92994 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
BRF1Q92994 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.93■□□□□ 0.94
BRF1Q92994 KRT8P26-201ENST00000534154 1276 ntBASIC20.93■□□□□ 0.94
BRF1Q92994 AC124864.1-201ENST00000623408 392 ntBASIC20.93■□□□□ 0.94
BRF1Q92994 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.93■□□□□ 0.94
BRF1Q92994 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.93■□□□□ 0.94
BRF1Q92994 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.93■□□□□ 0.94
BRF1Q92994 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
BRF1Q92994 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.93■□□□□ 0.94
BRF1Q92994 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BRF1Q92994 AC133963.1-201ENST00000504166 1679 ntBASIC20.93■□□□□ 0.94
BRF1Q92994 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
BRF1Q92994 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 AL845331.1-201ENST00000424978 1190 ntBASIC20.92■□□□□ 0.94
BRF1Q92994 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.92■□□□□ 0.94
BRF1Q92994 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.92■□□□□ 0.94
BRF1Q92994 AC116407.4-201ENST00000623319 1061 ntBASIC20.92■□□□□ 0.94
BRF1Q92994 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 AC139713.2-201ENST00000641328 2723 ntBASIC20.92■□□□□ 0.94
BRF1Q92994 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.92■□□□□ 0.94
BRF1Q92994 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
BRF1Q92994 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BRF1Q92994 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
BRF1Q92994 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
BRF1Q92994 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.91■□□□□ 0.94
BRF1Q92994 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.91■□□□□ 0.94
BRF1Q92994 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
BRF1Q92994 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.91■□□□□ 0.94
BRF1Q92994 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.91■□□□□ 0.94
BRF1Q92994 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
BRF1Q92994 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 IGHV3-41-201ENST00000613121 348 ntBASIC20.91■□□□□ 0.94
BRF1Q92994 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.91■□□□□ 0.94
BRF1Q92994 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.91■□□□□ 0.94
BRF1Q92994 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.91■□□□□ 0.94
BRF1Q92994 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.91■□□□□ 0.94
BRF1Q92994 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRF1Q92994 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.9■□□□□ 0.94
BRF1Q92994 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.9■□□□□ 0.94
BRF1Q92994 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
BRF1Q92994 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 PCED1CP-201ENST00000419887 785 ntBASIC20.9■□□□□ 0.94
BRF1Q92994 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 KRT18P35-201ENST00000510488 1269 ntBASIC20.9■□□□□ 0.94
BRF1Q92994 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRF1Q92994 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms