Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC006455.2-201ENST00000429931 906 ntBASIC11.09□□□□□ -0.63
LINC00643Q86TS7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 AL033527.3-201ENST00000566366 1196 ntBASIC11.09□□□□□ -0.63
LINC00643Q86TS7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 AC005915.1-201ENST00000624912 2018 ntBASIC11.09□□□□□ -0.63
LINC00643Q86TS7 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 PCDHA3-202ENST00000532566 4594 ntBASIC11.09□□□□□ -0.63
LINC00643Q86TS7 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
LINC00643Q86TS7 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 SNX18-202ENST00000343017 3140 ntBASIC11.08□□□□□ -0.64
LINC00643Q86TS7 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 MIR3648-2-201ENST00000581792 180 ntBASIC11.08□□□□□ -0.64
LINC00643Q86TS7 MIR3648-1-201ENST00000615959 180 ntBASIC11.08□□□□□ -0.64
LINC00643Q86TS7 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 KCP-203ENST00000610776 5108 ntTSL 5 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 MYO15B-237ENST00000642007 4893 ntBASIC11.08□□□□□ -0.64
LINC00643Q86TS7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LINC00643Q86TS7 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 AC092171.3-201ENST00000610122 2651 ntBASIC11.07□□□□□ -0.64
LINC00643Q86TS7 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
LINC00643Q86TS7 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms