Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 KRT8P48-201ENST00000515599 1220 ntBASIC18.68■□□□□ 0.58
CHD9Q3L8U1 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 NME2P1-201ENST00000426182 414 ntBASIC18.67■□□□□ 0.58
CHD9Q3L8U1 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 ACTL9-202ENST00000612068 1252 ntBASIC18.67■□□□□ 0.58
CHD9Q3L8U1 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.67■□□□□ 0.58
CHD9Q3L8U1 AC019129.2-201ENST00000609837 1235 ntBASIC18.67■□□□□ 0.58
CHD9Q3L8U1 PHGDH-209ENST00000641074 1780 ntBASIC18.66■□□□□ 0.58
CHD9Q3L8U1 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 COX5BP2-201ENST00000392354 334 ntBASIC18.66■□□□□ 0.58
CHD9Q3L8U1 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 CR383656.12-201ENST00000549567 513 ntBASIC18.66■□□□□ 0.58
CHD9Q3L8U1 TUBB3P1-201ENST00000405796 1332 ntBASIC18.66■□□□□ 0.58
CHD9Q3L8U1 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.66■□□□□ 0.58
CHD9Q3L8U1 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 KRT18P32-201ENST00000424695 1287 ntBASIC18.65■□□□□ 0.58
CHD9Q3L8U1 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 AC003669.1-201ENST00000334569 611 ntBASIC18.65■□□□□ 0.58
CHD9Q3L8U1 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.65■□□□□ 0.58
CHD9Q3L8U1 ARSEP1-201ENST00000420443 635 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms