Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 PCED1CP-201ENST00000419887 785 ntBASIC20.57■□□□□ 0.88
CTDNEP1O95476 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 AP002383.4-201ENST00000442518 975 ntBASIC20.57■□□□□ 0.88
CTDNEP1O95476 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 AC090616.6-201ENST00000582640 721 ntBASIC20.57■□□□□ 0.88
CTDNEP1O95476 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 IGHV3-41-201ENST00000613121 348 ntBASIC20.57■□□□□ 0.88
CTDNEP1O95476 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 AC020916.1-201ENST00000587762 1774 ntBASIC20.57■□□□□ 0.88
CTDNEP1O95476 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 AL023806.1-201ENST00000603994 1649 ntBASIC20.56■□□□□ 0.88
CTDNEP1O95476 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 AP001094.4-201ENST00000579008 2176 ntBASIC20.56■□□□□ 0.88
CTDNEP1O95476 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.56■□□□□ 0.88
CTDNEP1O95476 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTDNEP1O95476 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CTDNEP1O95476 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 AC019129.2-201ENST00000609837 1235 ntBASIC20.55■□□□□ 0.88
CTDNEP1O95476 AL590326.2-201ENST00000625139 305 ntBASIC20.55■□□□□ 0.88
CTDNEP1O95476 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.55■□□□□ 0.88
CTDNEP1O95476 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTDNEP1O95476 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 CHCHD2P8-201ENST00000429873 447 ntBASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms