Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Vps39Q8R5L3 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Vps39Q8R5L3 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Vps39Q8R5L3 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Vps39Q8R5L3 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Vps39Q8R5L3 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Vps39Q8R5L3 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Vps39Q8R5L3 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Vps39Q8R5L3 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Vps39Q8R5L3 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Vps39Q8R5L3 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Vps39Q8R5L3 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Vps39Q8R5L3 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC22.23■■□□□ 1.15
Vps39Q8R5L3 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Vps39Q8R5L3 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC22.23■■□□□ 1.15
Vps39Q8R5L3 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Vps39Q8R5L3 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC22.22■■□□□ 1.15
Vps39Q8R5L3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Vps39Q8R5L3 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC22.21■■□□□ 1.15
Vps39Q8R5L3 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Vps39Q8R5L3 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
Vps39Q8R5L3 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC22.21■■□□□ 1.15
Vps39Q8R5L3 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Vps39Q8R5L3 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC22.2■■□□□ 1.15
Vps39Q8R5L3 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Vps39Q8R5L3 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Vps39Q8R5L3 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
Vps39Q8R5L3 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Vps39Q8R5L3 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
Vps39Q8R5L3 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Vps39Q8R5L3 AC164433.2-201ENSMUST00000226346 1701 ntBASIC22.2■■□□□ 1.14
Vps39Q8R5L3 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Vps39Q8R5L3 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC22.19■■□□□ 1.14
Vps39Q8R5L3 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Vps39Q8R5L3 Gm45364-201ENSMUST00000210883 159 ntBASIC22.19■■□□□ 1.14
Vps39Q8R5L3 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Vps39Q8R5L3 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Vps39Q8R5L3 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC22.19■■□□□ 1.14
Vps39Q8R5L3 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Vps39Q8R5L3 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Vps39Q8R5L3 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Vps39Q8R5L3 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC22.18■■□□□ 1.14
Vps39Q8R5L3 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC22.18■■□□□ 1.14
Vps39Q8R5L3 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Vps39Q8R5L3 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Vps39Q8R5L3 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Vps39Q8R5L3 Terc-201ENSMUST00000082862 423 ntBASIC22.17■■□□□ 1.14
Vps39Q8R5L3 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Vps39Q8R5L3 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC22.16■■□□□ 1.14
Vps39Q8R5L3 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
Vps39Q8R5L3 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC22.16■■□□□ 1.14
Vps39Q8R5L3 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Vps39Q8R5L3 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Vps39Q8R5L3 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Vps39Q8R5L3 AC167019.3-201ENSMUST00000228225 1266 ntBASIC22.15■■□□□ 1.14
Vps39Q8R5L3 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Vps39Q8R5L3 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Vps39Q8R5L3 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Vps39Q8R5L3 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Vps39Q8R5L3 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Vps39Q8R5L3 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Vps39Q8R5L3 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Vps39Q8R5L3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.13
Vps39Q8R5L3 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
Vps39Q8R5L3 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Vps39Q8R5L3 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Vps39Q8R5L3 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Vps39Q8R5L3 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Vps39Q8R5L3 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Vps39Q8R5L3 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Vps39Q8R5L3 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Vps39Q8R5L3 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Vps39Q8R5L3 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Vps39Q8R5L3 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Vps39Q8R5L3 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Vps39Q8R5L3 Gm6934-201ENSMUST00000194780 1905 ntBASIC22.11■■□□□ 1.13
Vps39Q8R5L3 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Vps39Q8R5L3 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC22.11■■□□□ 1.13
Vps39Q8R5L3 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Vps39Q8R5L3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Vps39Q8R5L3 Pkd1-207ENSMUST00000228550 1050 ntBASIC22.1■■□□□ 1.13
Vps39Q8R5L3 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC22.1■■□□□ 1.13
Vps39Q8R5L3 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Vps39Q8R5L3 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Vps39Q8R5L3 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Vps39Q8R5L3 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Vps39Q8R5L3 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Vps39Q8R5L3 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Vps39Q8R5L3 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Vps39Q8R5L3 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Vps39Q8R5L3 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Vps39Q8R5L3 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC22.08■■□□□ 1.12
Vps39Q8R5L3 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC22.08■■□□□ 1.12
Vps39Q8R5L3 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Vps39Q8R5L3 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Vps39Q8R5L3 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Vps39Q8R5L3 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Vps39Q8R5L3 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Vps39Q8R5L3 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Vps39Q8R5L3 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 10.7 ms