Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 FEM1AP3-201ENST00000403722 1741 ntBASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.84■□□□□ 0.45
COL25A1Q9BXS0 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.83■□□□□ 0.45
COL25A1Q9BXS0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL25A1Q9BXS0 AC012676.1-201ENST00000574705 1949 ntBASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 ANKRD19P-201ENST00000338192 862 ntBASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 AC087499.6-201ENST00000411576 835 ntBASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 DFFBP1-201ENST00000433250 979 ntBASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 AC104989.1-201ENST00000519711 778 ntBASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 SPDYE12P-201ENST00000618416 771 ntBASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL25A1Q9BXS0 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 BTBD6P1-201ENST00000412176 1267 ntBASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 TMEM14DP-201ENST00000422205 345 ntBASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 Z82202.1-201ENST00000623446 1880 ntBASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
COL25A1Q9BXS0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 AC009407.1-201ENST00000568958 598 ntBASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.81■□□□□ 0.44
COL25A1Q9BXS0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 AL391825.1-201ENST00000457671 1364 ntBASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms