Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 AC026120.1-201ENST00000611536 926 ntBASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SMC1BQ8NDV3 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC21.02■□□□□ 0.95
SMC1BQ8NDV3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.02■□□□□ 0.95
SMC1BQ8NDV3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.95
SMC1BQ8NDV3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.02■□□□□ 0.95
SMC1BQ8NDV3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 AC140878.1-201ENST00000565277 250 ntBASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 AP001059.3-201ENST00000619053 235 ntBASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 AC006116.8-202ENST00000587620 1550 ntBASIC21.01■□□□□ 0.95
SMC1BQ8NDV3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMC1BQ8NDV3 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21■□□□□ 0.95
SMC1BQ8NDV3 LBX2-AS1-202ENST00000603175 2083 ntBASIC21■□□□□ 0.95
SMC1BQ8NDV3 AC099343.3-201ENST00000605834 2503 ntBASIC21■□□□□ 0.95
SMC1BQ8NDV3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SMC1BQ8NDV3 AC096633.1-201ENST00000422446 749 ntBASIC21■□□□□ 0.95
SMC1BQ8NDV3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC21■□□□□ 0.95
SMC1BQ8NDV3 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21■□□□□ 0.95
SMC1BQ8NDV3 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMC1BQ8NDV3 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMC1BQ8NDV3 IGHV3-71-201ENST00000523324 359 ntBASIC21■□□□□ 0.95
SMC1BQ8NDV3 BAD-207ENST00000544785 525 ntTSL 3 BASIC21■□□□□ 0.95
SMC1BQ8NDV3 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21■□□□□ 0.95
SMC1BQ8NDV3 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21■□□□□ 0.95
SMC1BQ8NDV3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMC1BQ8NDV3 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMC1BQ8NDV3 AL353593.2-201ENST00000602529 1483 ntBASIC21■□□□□ 0.95
SMC1BQ8NDV3 LINC01126-201ENST00000623515 1646 ntBASIC21■□□□□ 0.95
SMC1BQ8NDV3 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SMC1BQ8NDV3 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 TREML5P-201ENST00000421694 576 ntBASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC1BQ8NDV3 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 RPL30-202ENST00000396070 440 ntTSL 2 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 PIN1P1-201ENST00000412108 996 ntBASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 GPR53P-205ENST00000457298 1084 ntBASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 CXCL1P1-201ENST00000502804 216 ntBASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms