Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SPDYE15P-201ENST00000424157 909 ntBASIC17.26■□□□□ 0.35
FOXA1P55317 AC034232.1-201ENST00000506026 1064 ntBASIC17.26■□□□□ 0.35
FOXA1P55317 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXA1P55317 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
FOXA1P55317 AL136038.4-201ENST00000603606 1261 ntBASIC17.26■□□□□ 0.35
FOXA1P55317 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
FOXA1P55317 AC004263.2-201ENST00000617183 678 ntBASIC17.26■□□□□ 0.35
FOXA1P55317 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXA1P55317 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXA1P55317 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
FOXA1P55317 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.25■□□□□ 0.35
FOXA1P55317 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
FOXA1P55317 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 KRT89P-201ENST00000620027 1478 ntBASIC17.25■□□□□ 0.35
FOXA1P55317 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
FOXA1P55317 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
FOXA1P55317 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.25■□□□□ 0.35
FOXA1P55317 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXA1P55317 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXA1P55317 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXA1P55317 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
FOXA1P55317 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA1P55317 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
FOXA1P55317 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.25■□□□□ 0.35
FOXA1P55317 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXA1P55317 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXA1P55317 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXA1P55317 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
FOXA1P55317 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXA1P55317 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXA1P55317 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 AC084018.2-201ENST00000613093 2607 ntBASIC17.24■□□□□ 0.35
FOXA1P55317 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
FOXA1P55317 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXA1P55317 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.24■□□□□ 0.35
FOXA1P55317 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXA1P55317 AC116407.2-201ENST00000613639 860 ntBASIC17.24■□□□□ 0.35
FOXA1P55317 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
FOXA1P55317 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXA1P55317 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
FOXA1P55317 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA1P55317 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXA1P55317 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
FOXA1P55317 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXA1P55317 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
FOXA1P55317 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXA1P55317 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms