Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
HMGCS2P54868 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGCS2P54868 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGCS2P54868 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGCS2P54868 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
HMGCS2P54868 AC002310.6-201ENST00000624451 1377 ntBASIC20.47■□□□□ 0.87
HMGCS2P54868 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
HMGCS2P54868 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.47■□□□□ 0.87
HMGCS2P54868 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 AC100803.2-201ENST00000562459 1963 ntBASIC20.47■□□□□ 0.87
HMGCS2P54868 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 AC003669.1-201ENST00000334569 611 ntBASIC20.47■□□□□ 0.87
HMGCS2P54868 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGCS2P54868 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGCS2P54868 VN2R19P-201ENST00000442399 1052 ntBASIC20.47■□□□□ 0.87
HMGCS2P54868 AP006288.1-201ENST00000446065 395 ntBASIC20.47■□□□□ 0.87
HMGCS2P54868 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGCS2P54868 RPS15P9-201ENST00000494093 319 ntBASIC20.47■□□□□ 0.87
HMGCS2P54868 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGCS2P54868 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGCS2P54868 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGCS2P54868 AC005829.1-201ENST00000570002 483 ntBASIC20.47■□□□□ 0.87
HMGCS2P54868 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
HMGCS2P54868 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGCS2P54868 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
HMGCS2P54868 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGCS2P54868 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGCS2P54868 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGCS2P54868 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGCS2P54868 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGCS2P54868 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.46■□□□□ 0.87
HMGCS2P54868 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGCS2P54868 SIGLEC30P-201ENST00000455569 941 ntBASIC20.46■□□□□ 0.87
HMGCS2P54868 IGHV3-65-201ENST00000523210 341 ntBASIC20.46■□□□□ 0.87
HMGCS2P54868 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
HMGCS2P54868 AC109462.3-201ENST00000573934 613 ntBASIC20.46■□□□□ 0.87
HMGCS2P54868 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.46■□□□□ 0.87
HMGCS2P54868 AC004790.2-201ENST00000623588 572 ntBASIC20.46■□□□□ 0.87
HMGCS2P54868 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGCS2P54868 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGCS2P54868 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGCS2P54868 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGCS2P54868 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
HMGCS2P54868 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGCS2P54868 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGCS2P54868 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGCS2P54868 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGCS2P54868 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGCS2P54868 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
HMGCS2P54868 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.45■□□□□ 0.86
HMGCS2P54868 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGCS2P54868 HCG4B-203ENST00000450128 991 ntBASIC20.45■□□□□ 0.86
HMGCS2P54868 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGCS2P54868 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGCS2P54868 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
HMGCS2P54868 MIR4469-201ENST00000583919 79 ntBASIC20.45■□□□□ 0.86
HMGCS2P54868 AC008667.4-201ENST00000607370 168 ntBASIC20.45■□□□□ 0.86
HMGCS2P54868 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGCS2P54868 AL513190.1-201ENST00000621254 727 ntBASIC20.45■□□□□ 0.86
HMGCS2P54868 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGCS2P54868 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGCS2P54868 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
HMGCS2P54868 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
HMGCS2P54868 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGCS2P54868 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGCS2P54868 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGCS2P54868 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.45■□□□□ 0.86
HMGCS2P54868 AC018445.3-201ENST00000624177 1945 ntBASIC20.45■□□□□ 0.86
HMGCS2P54868 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGCS2P54868 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
HMGCS2P54868 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGCS2P54868 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
HMGCS2P54868 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms