Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CIITAP33076 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.04■□□□□ 0.8
CIITAP33076 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CIITAP33076 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CIITAP33076 AP005117.1-201ENST00000584346 1413 ntBASIC20.04■□□□□ 0.8
CIITAP33076 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 AC004870.1-201ENST00000315132 882 ntBASIC20.04■□□□□ 0.8
CIITAP33076 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CIITAP33076 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CIITAP33076 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.04■□□□□ 0.8
CIITAP33076 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.04■□□□□ 0.8
CIITAP33076 AF238378.1-201ENST00000526806 358 ntBASIC20.04■□□□□ 0.8
CIITAP33076 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CIITAP33076 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.04■□□□□ 0.8
CIITAP33076 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.04■□□□□ 0.8
CIITAP33076 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CIITAP33076 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CIITAP33076 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CIITAP33076 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
CIITAP33076 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CIITAP33076 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CIITAP33076 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CIITAP33076 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.03■□□□□ 0.8
CIITAP33076 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
CIITAP33076 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.03■□□□□ 0.8
CIITAP33076 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.03■□□□□ 0.8
CIITAP33076 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.03■□□□□ 0.8
CIITAP33076 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CIITAP33076 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
CIITAP33076 RBM17P3-201ENST00000417687 1192 ntBASIC20.03■□□□□ 0.8
CIITAP33076 TPM4P1-201ENST00000436100 807 ntBASIC20.03■□□□□ 0.8
CIITAP33076 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.03■□□□□ 0.8
CIITAP33076 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.03■□□□□ 0.8
CIITAP33076 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
CIITAP33076 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CIITAP33076 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.03■□□□□ 0.8
CIITAP33076 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.03■□□□□ 0.8
CIITAP33076 AL353593.2-201ENST00000602529 1483 ntBASIC20.03■□□□□ 0.8
CIITAP33076 PMPCAP1-201ENST00000508114 1576 ntBASIC20.03■□□□□ 0.8
CIITAP33076 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CIITAP33076 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CIITAP33076 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
CIITAP33076 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CIITAP33076 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CIITAP33076 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.02■□□□□ 0.8
CIITAP33076 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CIITAP33076 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CIITAP33076 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CIITAP33076 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CIITAP33076 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
CIITAP33076 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.02■□□□□ 0.8
CIITAP33076 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.02■□□□□ 0.8
CIITAP33076 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.02■□□□□ 0.8
CIITAP33076 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.02■□□□□ 0.8
CIITAP33076 AC104692.2-201ENST00000603054 253 ntBASIC20.02■□□□□ 0.8
CIITAP33076 AL355877.3-201ENST00000622820 899 ntBASIC20.02■□□□□ 0.8
CIITAP33076 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.02■□□□□ 0.8
CIITAP33076 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CIITAP33076 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CIITAP33076 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CIITAP33076 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CIITAP33076 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CIITAP33076 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CIITAP33076 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CIITAP33076 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.02■□□□□ 0.79
CIITAP33076 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.02■□□□□ 0.79
CIITAP33076 REXO1L11P-201ENST00000620964 1927 ntBASIC20.02■□□□□ 0.79
CIITAP33076 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.02■□□□□ 0.79
CIITAP33076 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CIITAP33076 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
CIITAP33076 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CIITAP33076 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.01■□□□□ 0.79
CIITAP33076 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms