Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 AC145285.6-201ENST00000604632 637 ntBASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 NEK4P2-201ENST00000580004 1012 ntBASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC39Q9UFE4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 AP000523.1-201ENST00000398242 1049 ntBASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC39Q9UFE4 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms