Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX4Q06945 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SOX4Q06945 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.03■□□□□ 0.64
SOX4Q06945 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.03■□□□□ 0.64
SOX4Q06945 AC079776.2-201ENST00000641154 1609 ntBASIC19.03■□□□□ 0.64
SOX4Q06945 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX4Q06945 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX4Q06945 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
SOX4Q06945 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.02■□□□□ 0.64
SOX4Q06945 IL9RP2-201ENST00000423948 1312 ntBASIC19.02■□□□□ 0.64
SOX4Q06945 AC138028.4-201ENST00000564984 1845 ntBASIC19.02■□□□□ 0.64
SOX4Q06945 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SOX4Q06945 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.02■□□□□ 0.64
SOX4Q06945 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.02■□□□□ 0.64
SOX4Q06945 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 KRT18P55-202ENST00000578578 1546 ntBASIC19.02■□□□□ 0.64
SOX4Q06945 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.02■□□□□ 0.64
SOX4Q06945 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.02■□□□□ 0.64
SOX4Q06945 BX005266.1-201ENST00000473402 457 ntBASIC19.02■□□□□ 0.64
SOX4Q06945 SLC25A1P1-201ENST00000528351 927 ntBASIC19.02■□□□□ 0.64
SOX4Q06945 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.02■□□□□ 0.64
SOX4Q06945 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.02■□□□□ 0.64
SOX4Q06945 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.02■□□□□ 0.64
SOX4Q06945 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.02■□□□□ 0.64
SOX4Q06945 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SOX4Q06945 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SOX4Q06945 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SOX4Q06945 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.01■□□□□ 0.63
SOX4Q06945 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.01■□□□□ 0.63
SOX4Q06945 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.01■□□□□ 0.63
SOX4Q06945 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.01■□□□□ 0.63
SOX4Q06945 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 AC012640.2-201ENST00000561606 901 ntBASIC19.01■□□□□ 0.63
SOX4Q06945 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.01■□□□□ 0.63
SOX4Q06945 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.01■□□□□ 0.63
SOX4Q06945 MTDHP4-201ENST00000600287 670 ntBASIC19.01■□□□□ 0.63
SOX4Q06945 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.01■□□□□ 0.63
SOX4Q06945 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 AL353593.2-201ENST00000602529 1483 ntBASIC19.01■□□□□ 0.63
SOX4Q06945 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.01■□□□□ 0.63
SOX4Q06945 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SOX4Q06945 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19■□□□□ 0.63
SOX4Q06945 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX4Q06945 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX4Q06945 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
SOX4Q06945 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 AC103564.2-201ENST00000432853 1299 ntBASIC19■□□□□ 0.63
SOX4Q06945 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19■□□□□ 0.63
SOX4Q06945 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 AC073592.4-201ENST00000623827 446 ntBASIC19■□□□□ 0.63
SOX4Q06945 AC073592.5-201ENST00000624854 528 ntBASIC19■□□□□ 0.63
SOX4Q06945 AL354751.1-201ENST00000412768 1863 ntBASIC19■□□□□ 0.63
SOX4Q06945 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX4Q06945 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19■□□□□ 0.63
SOX4Q06945 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SOX4Q06945 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19■□□□□ 0.63
SOX4Q06945 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SOX4Q06945 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SOX4Q06945 AC132938.5-201ENST00000624980 1813 ntBASIC19■□□□□ 0.63
SOX4Q06945 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SOX4Q06945 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19■□□□□ 0.63
SOX4Q06945 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SOX4Q06945 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.99■□□□□ 0.63
SOX4Q06945 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms