Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF541Q9H0D2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.28■■□□□ 1
ZNF541Q9H0D2 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF541Q9H0D2 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.28■■□□□ 1
ZNF541Q9H0D2 SIGLEC30P-201ENST00000455569 941 ntBASIC21.28■■□□□ 1
ZNF541Q9H0D2 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.28■■□□□ 1
ZNF541Q9H0D2 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF541Q9H0D2 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.28■■□□□ 1
ZNF541Q9H0D2 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF541Q9H0D2 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.28■■□□□ 1
ZNF541Q9H0D2 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.28■■□□□ 1
ZNF541Q9H0D2 AJ011932.1-201ENST00000621707 465 ntBASIC21.28■■□□□ 1
ZNF541Q9H0D2 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.28■■□□□ 1
ZNF541Q9H0D2 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.27■■□□□ 1
ZNF541Q9H0D2 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.27■■□□□ 1
ZNF541Q9H0D2 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.27■■□□□ 1
ZNF541Q9H0D2 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.27■■□□□ 1
ZNF541Q9H0D2 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.27■■□□□ 1
ZNF541Q9H0D2 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF541Q9H0D2 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF541Q9H0D2 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.27■■□□□ 1
ZNF541Q9H0D2 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.27■■□□□ 1
ZNF541Q9H0D2 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.27■■□□□ 1
ZNF541Q9H0D2 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 GMCL1P1-201ENST00000463439 1581 ntBASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 DUX4L27-201ENST00000554796 1261 ntBASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 AC068137.2-201ENST00000605408 478 ntBASIC21.27■□□□□ 0.99
ZNF541Q9H0D2 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 AC092919.2-201ENST00000623631 1645 ntBASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 AC003669.1-201ENST00000334569 611 ntBASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 REXO1L3P-201ENST00000622202 1288 ntBASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 AC007064.4-201ENST00000637740 555 ntBASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
ZNF541Q9H0D2 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 AP002414.1-201ENST00000391405 1147 ntBASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 ADH5P3-201ENST00000433842 1137 ntBASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 AC093214.1-201ENST00000511688 1107 ntBASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 AL121761.2-201ENST00000598007 1648 ntBASIC21.25■□□□□ 0.99
ZNF541Q9H0D2 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 PMS2P4-201ENST00000412466 1052 ntBASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms