Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Gm13233-201ENSMUST00000118760 1443 ntBASIC16■□□□□ 0.15
Rpp40Q8R1F9 Gm13244-201ENSMUST00000118855 1446 ntBASIC16■□□□□ 0.15
Rpp40Q8R1F9 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16■□□□□ 0.15
Rpp40Q8R1F9 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Gm18889-201ENSMUST00000174284 929 ntBASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Gm44335-201ENSMUST00000196879 141 ntBASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Gm44297-201ENSMUST00000198304 141 ntBASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Gm44346-201ENSMUST00000198851 141 ntBASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Gm18057-201ENSMUST00000208220 503 ntBASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
Rpp40Q8R1F9 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Rpp40Q8R1F9 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Nudt18-203ENSMUST00000228768 1578 ntBASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 AC166341.4-201ENSMUST00000220625 123 ntBASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Rpp40Q8R1F9 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms