Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Gm25239-201ENSMUST00000174915 86 ntBASIC40.83■■■■■ 4.13
Rpp40Q8R1F9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC37.63■■■■□ 3.61
Rpp40Q8R1F9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC37.1■■■■□ 3.53
Rpp40Q8R1F9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.57■■■■□ 3.45
Rpp40Q8R1F9 Gm15042-201ENSMUST00000120212 883 ntBASIC35.94■■■■□ 3.34
Rpp40Q8R1F9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
Rpp40Q8R1F9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.34■■■■□ 3.25
Rpp40Q8R1F9 Gm24109-201ENSMUST00000175489 103 ntBASIC35.28■■■■□ 3.24
Rpp40Q8R1F9 Gm15045-201ENSMUST00000117359 883 ntBASIC35.23■■■■□ 3.23
Rpp40Q8R1F9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
Rpp40Q8R1F9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.43■■■■□ 3.1
Rpp40Q8R1F9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
Rpp40Q8R1F9 Gm23366-201ENSMUST00000175022 89 ntBASIC34.11■■■■□ 3.05
Rpp40Q8R1F9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
Rpp40Q8R1F9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
Rpp40Q8R1F9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.89■■■■□ 3.02
Rpp40Q8R1F9 Psd-208ENSMUST00000224556 2034 ntBASIC33.8■■■■□ 3
Rpp40Q8R1F9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.55■■■□□ 2.96
Rpp40Q8R1F9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Rpp40Q8R1F9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC33.52■■■□□ 2.96
Rpp40Q8R1F9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Rpp40Q8R1F9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Rpp40Q8R1F9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.32■■■□□ 2.92
Rpp40Q8R1F9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.25■■■□□ 2.91
Rpp40Q8R1F9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
Rpp40Q8R1F9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.1■■■□□ 2.89
Rpp40Q8R1F9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.1■■■□□ 2.89
Rpp40Q8R1F9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.07■■■□□ 2.88
Rpp40Q8R1F9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.99■■■□□ 2.87
Rpp40Q8R1F9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Rpp40Q8R1F9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Rpp40Q8R1F9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.65■■■□□ 2.82
Rpp40Q8R1F9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.59■■■□□ 2.81
Rpp40Q8R1F9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Rpp40Q8R1F9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
Rpp40Q8R1F9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC32.35■■■□□ 2.77
Rpp40Q8R1F9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Rpp40Q8R1F9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Rpp40Q8R1F9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Rpp40Q8R1F9 Gm25238-201ENSMUST00000174914 89 ntBASIC32.15■■■□□ 2.74
Rpp40Q8R1F9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.05■■■□□ 2.72
Rpp40Q8R1F9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.03■■■□□ 2.72
Rpp40Q8R1F9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Rpp40Q8R1F9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.98■■■□□ 2.71
Rpp40Q8R1F9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Rpp40Q8R1F9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.76■■■□□ 2.67
Rpp40Q8R1F9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Rpp40Q8R1F9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Rpp40Q8R1F9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Rpp40Q8R1F9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Rpp40Q8R1F9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Rpp40Q8R1F9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Rpp40Q8R1F9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Rpp40Q8R1F9 Gm27325-201ENSMUST00000175467 74 ntBASIC31.56■■■□□ 2.64
Rpp40Q8R1F9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.53■■■□□ 2.64
Rpp40Q8R1F9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.5■■■□□ 2.63
Rpp40Q8R1F9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Rpp40Q8R1F9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Rpp40Q8R1F9 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.35■■■□□ 2.61
Rpp40Q8R1F9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.29■■■□□ 2.6
Rpp40Q8R1F9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Rpp40Q8R1F9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.21■■■□□ 2.59
Rpp40Q8R1F9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Rpp40Q8R1F9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Rpp40Q8R1F9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Rpp40Q8R1F9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.16■■■□□ 2.58
Rpp40Q8R1F9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
Rpp40Q8R1F9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.1■■■□□ 2.57
Rpp40Q8R1F9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Rpp40Q8R1F9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
Rpp40Q8R1F9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Rpp40Q8R1F9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
Rpp40Q8R1F9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
Rpp40Q8R1F9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.91■■■□□ 2.54
Rpp40Q8R1F9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Rpp40Q8R1F9 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.86■■■□□ 2.53
Rpp40Q8R1F9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Rpp40Q8R1F9 Rab21-202ENSMUST00000218831 843 ntBASIC30.79■■■□□ 2.52
Rpp40Q8R1F9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Rpp40Q8R1F9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.76■■■□□ 2.51
Rpp40Q8R1F9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
Rpp40Q8R1F9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Rpp40Q8R1F9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30.65■■■□□ 2.5
Rpp40Q8R1F9 Gm25262-201ENSMUST00000174934 133 ntBASIC30.61■■■□□ 2.49
Rpp40Q8R1F9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Rpp40Q8R1F9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
Rpp40Q8R1F9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Rpp40Q8R1F9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
Rpp40Q8R1F9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Rpp40Q8R1F9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Rpp40Q8R1F9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.42■■■□□ 2.46
Rpp40Q8R1F9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.42■■■□□ 2.46
Rpp40Q8R1F9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.45
Rpp40Q8R1F9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Rpp40Q8R1F9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Rpp40Q8R1F9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Rpp40Q8R1F9 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Rpp40Q8R1F9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Rpp40Q8R1F9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Rpp40Q8R1F9 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Retrieved 100 of 76,532 protein–RNA pairs in 127.9 ms