Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC12.8□□□□□ -0.36
PRKDCP78527 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC12.8□□□□□ -0.36
PRKDCP78527 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC12.8□□□□□ -0.36
PRKDCP78527 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC12.8□□□□□ -0.36
PRKDCP78527 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.8□□□□□ -0.36
PRKDCP78527 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC12.8□□□□□ -0.36
PRKDCP78527 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
PRKDCP78527 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 AC243562.1-201ENST00000560672 389 ntBASIC12.8□□□□□ -0.36
PRKDCP78527 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
PRKDCP78527 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.8□□□□□ -0.36
PRKDCP78527 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 TSSK5P-201ENST00000423978 907 ntBASIC12.79□□□□□ -0.36
PRKDCP78527 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC12.79□□□□□ -0.36
PRKDCP78527 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
PRKDCP78527 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 IGHV3OR16-16-201ENST00000563644 343 ntBASIC12.79□□□□□ -0.36
PRKDCP78527 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 ACTL9-202ENST00000612068 1252 ntBASIC12.79□□□□□ -0.36
PRKDCP78527 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC12.79□□□□□ -0.36
PRKDCP78527 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
PRKDCP78527 AL512384.1-201ENST00000406683 331 ntBASIC12.79□□□□□ -0.36
PRKDCP78527 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 USB1-203ENST00000539737 1212 ntTSL 2 BASIC12.79□□□□□ -0.36
PRKDCP78527 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC12.79□□□□□ -0.36
PRKDCP78527 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 AC017083.2-201ENST00000608069 979 ntBASIC12.79□□□□□ -0.36
PRKDCP78527 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC12.79□□□□□ -0.36
PRKDCP78527 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.79□□□□□ -0.36
PRKDCP78527 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 KLF4P1-201ENST00000412782 1185 ntBASIC12.79□□□□□ -0.36
PRKDCP78527 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC12.79□□□□□ -0.36
PRKDCP78527 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC12.79□□□□□ -0.36
PRKDCP78527 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC12.79□□□□□ -0.36
PRKDCP78527 AL158211.3-201ENST00000607385 239 ntBASIC12.79□□□□□ -0.36
PRKDCP78527 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
PRKDCP78527 GID4-202ENST00000376345 1391 ntTSL 3 BASIC12.79□□□□□ -0.36
PRKDCP78527 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PRKDCP78527 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
PRKDCP78527 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 PALM-208ENST00000592155 2272 ntTSL 4 BASIC12.78□□□□□ -0.36
PRKDCP78527 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
PRKDCP78527 DGCR5-201ENST00000399539 862 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 AC112492.5-201ENST00000421897 457 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 FAM185BP-201ENST00000443595 716 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC12.78□□□□□ -0.36
PRKDCP78527 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC12.78□□□□□ -0.36
PRKDCP78527 KRT8P23-201ENST00000560090 1207 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 MIR4259-201ENST00000584466 101 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 AC003101.2-201ENST00000612557 442 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PRKDCP78527 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
PRKDCP78527 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PRKDCP78527 DDX43P3-201ENST00000441064 443 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 KRT17P7-201ENST00000451704 1104 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC12.78□□□□□ -0.36
PRKDCP78527 API5-211ENST00000534695 560 ntTSL 5 BASIC12.78□□□□□ -0.36
PRKDCP78527 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
PRKDCP78527 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
PRKDCP78527 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
PRKDCP78527 AC112191.1-201ENST00000523689 701 ntBASIC12.78□□□□□ -0.36
PRKDCP78527 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC12.78□□□□□ -0.36
PRKDCP78527 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.78□□□□□ -0.36
PRKDCP78527 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PRKDCP78527 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
PRKDCP78527 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
PRKDCP78527 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC12.77□□□□□ -0.36
PRKDCP78527 GIMAP3P-201ENST00000495150 836 ntBASIC12.77□□□□□ -0.36
PRKDCP78527 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
PRKDCP78527 AC026150.2-201ENST00000564693 1156 ntBASIC12.77□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms