Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC005498.2-205ENST00000593218 784 ntBASIC29.7■■■□□ 2.34
CUX1P39880 AC022145.2-201ENST00000598203 171 ntBASIC29.7■■■□□ 2.34
CUX1P39880 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
CUX1P39880 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC29.7■■■□□ 2.34
CUX1P39880 AC073592.3-201ENST00000625118 1834 ntBASIC29.7■■■□□ 2.34
CUX1P39880 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC29.69■■■□□ 2.34
CUX1P39880 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
CUX1P39880 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
CUX1P39880 AC025580.3-201ENST00000617932 1424 ntBASIC29.69■■■□□ 2.34
CUX1P39880 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
CUX1P39880 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
CUX1P39880 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
CUX1P39880 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC29.69■■■□□ 2.34
CUX1P39880 CYB561-216ENST00000582297 897 ntTSL 3 BASIC29.69■■■□□ 2.34
CUX1P39880 AC093512.1-201ENST00000617969 520 ntBASIC29.69■■■□□ 2.34
CUX1P39880 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC29.69■■■□□ 2.34
CUX1P39880 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC29.69■■■□□ 2.34
CUX1P39880 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC29.69■■■□□ 2.34
CUX1P39880 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC29.69■■■□□ 2.34
CUX1P39880 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC29.68■■■□□ 2.34
CUX1P39880 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX1P39880 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC29.68■■■□□ 2.34
CUX1P39880 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC29.68■■■□□ 2.34
CUX1P39880 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC29.68■■■□□ 2.34
CUX1P39880 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX1P39880 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX1P39880 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CUX1P39880 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX1P39880 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC29.68■■■□□ 2.34
CUX1P39880 AC109322.1-201ENST00000524499 1264 ntBASIC29.68■■■□□ 2.34
CUX1P39880 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC29.68■■■□□ 2.34
CUX1P39880 LSM12-202ENST00000585388 942 ntTSL 3 BASIC29.68■■■□□ 2.34
CUX1P39880 AL096865.1-201ENST00000606796 927 ntBASIC29.68■■■□□ 2.34
CUX1P39880 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC29.68■■■□□ 2.34
CUX1P39880 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC29.68■■■□□ 2.34
CUX1P39880 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC29.68■■■□□ 2.34
CUX1P39880 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CUX1P39880 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CUX1P39880 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC29.67■■■□□ 2.34
CUX1P39880 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC29.67■■■□□ 2.34
CUX1P39880 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC29.67■■■□□ 2.34
CUX1P39880 ACTG1P14-201ENST00000446382 1122 ntBASIC29.67■■■□□ 2.34
CUX1P39880 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC29.67■■■□□ 2.34
CUX1P39880 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC29.67■■■□□ 2.34
CUX1P39880 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC29.67■■■□□ 2.34
CUX1P39880 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC29.67■■■□□ 2.34
CUX1P39880 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 AC092919.2-201ENST00000623631 1645 ntBASIC29.67■■■□□ 2.34
CUX1P39880 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC29.67■■■□□ 2.34
CUX1P39880 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
CUX1P39880 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC29.67■■■□□ 2.34
CUX1P39880 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CUX1P39880 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC29.66■■■□□ 2.34
CUX1P39880 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC29.66■■■□□ 2.34
CUX1P39880 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC29.66■■■□□ 2.34
CUX1P39880 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC29.66■■■□□ 2.34
CUX1P39880 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC29.66■■■□□ 2.34
CUX1P39880 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
CUX1P39880 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC29.66■■■□□ 2.34
CUX1P39880 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC29.66■■■□□ 2.34
CUX1P39880 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC29.66■■■□□ 2.34
CUX1P39880 STK19B-204ENST00000512515 211 ntBASIC29.66■■■□□ 2.34
CUX1P39880 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC29.66■■■□□ 2.34
CUX1P39880 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CUX1P39880 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CUX1P39880 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CUX1P39880 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CUX1P39880 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CUX1P39880 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC29.65■■■□□ 2.34
CUX1P39880 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CUX1P39880 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
CUX1P39880 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC29.65■■■□□ 2.34
CUX1P39880 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC29.65■■■□□ 2.34
CUX1P39880 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CUX1P39880 LINC00982-205ENST00000420957 435 ntBASIC29.65■■■□□ 2.34
CUX1P39880 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC29.65■■■□□ 2.34
CUX1P39880 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC29.65■■■□□ 2.34
CUX1P39880 AC092364.2-202ENST00000597012 1073 ntBASIC29.65■■■□□ 2.34
CUX1P39880 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC29.65■■■□□ 2.34
CUX1P39880 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC29.65■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms