Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 KIRREL3-AS3-201ENST00000404882 831 ntBASIC14.37□□□□□ -0.11
HOXA3O43365 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HOXA3O43365 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXA3O43365 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXA3O43365 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.37□□□□□ -0.11
HOXA3O43365 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXA3O43365 AC139887.3-201ENST00000568585 713 ntBASIC14.37□□□□□ -0.11
HOXA3O43365 AL049840.3-201ENST00000602669 611 ntBASIC14.37□□□□□ -0.11
HOXA3O43365 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXA3O43365 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXA3O43365 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.37□□□□□ -0.11
HOXA3O43365 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXA3O43365 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXA3O43365 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
HOXA3O43365 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HOXA3O43365 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXA3O43365 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HOXA3O43365 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXA3O43365 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
HOXA3O43365 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 AP005117.1-201ENST00000584346 1413 ntBASIC14.36□□□□□ -0.11
HOXA3O43365 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 ABCD1P5-201ENST00000445663 754 ntBASIC14.36□□□□□ -0.11
HOXA3O43365 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA3O43365 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXA3O43365 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.36□□□□□ -0.11
HOXA3O43365 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HOXA3O43365 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA3O43365 AC006538.3-201ENST00000612495 578 ntBASIC14.36□□□□□ -0.11
HOXA3O43365 MIR7706-201ENST00000613747 67 ntBASIC14.36□□□□□ -0.11
HOXA3O43365 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXA3O43365 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA3O43365 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXA3O43365 FAM215A-202ENST00000632077 792 ntBASIC14.36□□□□□ -0.11
HOXA3O43365 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXA3O43365 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA3O43365 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA3O43365 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXA3O43365 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXA3O43365 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA3O43365 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA3O43365 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA3O43365 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXA3O43365 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
HOXA3O43365 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXA3O43365 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXA3O43365 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXA3O43365 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 AC117500.6-201ENST00000624871 588 ntBASIC14.35□□□□□ -0.11
HOXA3O43365 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 PODN-203ENST00000395871 2744 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA3O43365 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HOXA3O43365 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA3O43365 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA3O43365 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms