Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.32■■□□□ 1
FOXN1O15353 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.32■■□□□ 1
FOXN1O15353 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN1O15353 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.32■■□□□ 1
FOXN1O15353 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.32■■□□□ 1
FOXN1O15353 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN1O15353 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.32■■□□□ 1
FOXN1O15353 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN1O15353 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC21.31■■□□□ 1
FOXN1O15353 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC21.31■■□□□ 1
FOXN1O15353 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.31■■□□□ 1
FOXN1O15353 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.31■■□□□ 1
FOXN1O15353 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.31■■□□□ 1
FOXN1O15353 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
FOXN1O15353 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 KRT18P2-201ENST00000447938 1258 ntBASIC21.31■■□□□ 1
FOXN1O15353 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.31■■□□□ 1
FOXN1O15353 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.31■■□□□ 1
FOXN1O15353 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC21.31■■□□□ 1
FOXN1O15353 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.31■■□□□ 1
FOXN1O15353 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXN1O15353 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.31■■□□□ 1
FOXN1O15353 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.3■■□□□ 1
FOXN1O15353 KRT8P7-201ENST00000533003 1432 ntBASIC21.3■■□□□ 1
FOXN1O15353 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
FOXN1O15353 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 ANO7L1-203ENST00000602586 1720 ntBASIC21.3■■□□□ 1
FOXN1O15353 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.3■■□□□ 1
FOXN1O15353 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.3■■□□□ 1
FOXN1O15353 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC21.3■■□□□ 1
FOXN1O15353 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.3■■□□□ 1
FOXN1O15353 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.3■■□□□ 1
FOXN1O15353 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
FOXN1O15353 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.3■■□□□ 1
FOXN1O15353 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN1O15353 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
FOXN1O15353 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.29■■□□□ 1
FOXN1O15353 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
FOXN1O15353 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.29■■□□□ 1
FOXN1O15353 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.29■■□□□ 1
FOXN1O15353 TSEN15P1-201ENST00000423257 515 ntBASIC21.29■■□□□ 1
FOXN1O15353 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.29■■□□□ 1
FOXN1O15353 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.29■■□□□ 1
FOXN1O15353 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC21.29■■□□□ 1
FOXN1O15353 AC069262.1-201ENST00000539058 672 ntBASIC21.29■■□□□ 1
FOXN1O15353 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 C20orf181-201ENST00000623918 480 ntBASIC21.29■■□□□ 1
FOXN1O15353 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.29■■□□□ 1
FOXN1O15353 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
FOXN1O15353 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.29■■□□□ 1
FOXN1O15353 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN1O15353 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN1O15353 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN1O15353 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN1O15353 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN1O15353 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN1O15353 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN1O15353 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN1O15353 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.28■■□□□ 1
FOXN1O15353 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.28■■□□□ 1
FOXN1O15353 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
FOXN1O15353 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
FOXN1O15353 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms