Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 REXO1L6P-202ENST00000619970 1078 ntBASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC084018.2-201ENST00000613093 2607 ntBASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.56■□□□□ 0.4
TMX2-CTNND1H3BSU7 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 AP000347.1-202ENST00000435868 847 ntBASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC079776.4-201ENST00000511039 504 ntBASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms