Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 GMCL1P1-201ENST00000463439 1581 ntBASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 AP000347.1-202ENST00000435868 847 ntBASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 AL355877.3-201ENST00000622820 899 ntBASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRAIPQ9BWF2 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
TRAIPQ9BWF2 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 AC112698.1-201ENST00000510299 916 ntBASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAIPQ9BWF2 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.57■□□□□ 0.72
TRAIPQ9BWF2 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms