Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 CRYGEP-201ENST00000412192 528 ntBASIC17.59■□□□□ 0.41
VPS13AQ96RL7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.58■□□□□ 0.41
VPS13AQ96RL7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS13AQ96RL7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS13AQ96RL7 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.58■□□□□ 0.41
VPS13AQ96RL7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VPS13AQ96RL7 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS13AQ96RL7 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS13AQ96RL7 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 KRT8P47-201ENST00000604727 1398 ntBASIC17.58■□□□□ 0.4
VPS13AQ96RL7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 MRPS18AP1-201ENST00000414458 589 ntBASIC17.58■□□□□ 0.4
VPS13AQ96RL7 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VPS13AQ96RL7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 AL049757.1-201ENST00000616842 1596 ntBASIC17.57■□□□□ 0.4
VPS13AQ96RL7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 AC100803.2-201ENST00000562459 1963 ntBASIC17.57■□□□□ 0.4
VPS13AQ96RL7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13AQ96RL7 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 AC068587.9-201ENST00000641814 219 ntBASIC17.56■□□□□ 0.4
VPS13AQ96RL7 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 AL132655.2-201ENST00000596276 594 ntBASIC17.56■□□□□ 0.4
VPS13AQ96RL7 AD001527.2-201ENST00000622994 785 ntBASIC17.56■□□□□ 0.4
VPS13AQ96RL7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 AC009093.7-201ENST00000623853 1223 ntBASIC17.56■□□□□ 0.4
VPS13AQ96RL7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 PGM5P2-202ENST00000637225 1043 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms