Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 BCAR1-209ENST00000546196 1340 ntBASIC22.41■■□□□ 1.18
RC3H1Q5TC82 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 PTCHD3P3-201ENST00000403073 906 ntBASIC22.41■■□□□ 1.18
RC3H1Q5TC82 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 STK25P1-201ENST00000585406 838 ntBASIC22.41■■□□□ 1.18
RC3H1Q5TC82 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC22.41■■□□□ 1.18
RC3H1Q5TC82 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 STOM-202ENST00000347359 870 ntTSL 2 BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 AL139400.1-201ENST00000366220 510 ntBASIC22.4■■□□□ 1.18
RC3H1Q5TC82 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 AC074386.1-202ENST00000463561 864 ntBASIC22.4■■□□□ 1.18
RC3H1Q5TC82 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 AL353135.1-201ENST00000606729 504 ntBASIC22.4■■□□□ 1.18
RC3H1Q5TC82 AC106028.4-201ENST00000614509 607 ntBASIC22.4■■□□□ 1.18
RC3H1Q5TC82 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
RC3H1Q5TC82 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.18
RC3H1Q5TC82 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
RC3H1Q5TC82 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
RC3H1Q5TC82 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 CALY-203ENST00000368558 825 ntTSL 5 BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
RC3H1Q5TC82 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 SP100-208ENST00000427101 1922 ntTSL 2 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 TSEN15P1-201ENST00000423257 515 ntBASIC22.38■■□□□ 1.17
RC3H1Q5TC82 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 SPCS2P1-201ENST00000561636 679 ntBASIC22.38■■□□□ 1.17
RC3H1Q5TC82 CITED2-204ENST00000618718 901 ntTSL 2 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RC3H1Q5TC82 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 FAM58CP-201ENST00000435741 640 ntBASIC22.37■■□□□ 1.17
RC3H1Q5TC82 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 AC109462.3-201ENST00000573934 613 ntBASIC22.37■■□□□ 1.17
RC3H1Q5TC82 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 TMED1-207ENST00000591695 809 ntTSL 5 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 AC011467.4-201ENST00000594891 528 ntBASIC22.37■■□□□ 1.17
RC3H1Q5TC82 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 AC025580.3-201ENST00000617932 1424 ntBASIC22.37■■□□□ 1.17
RC3H1Q5TC82 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
RC3H1Q5TC82 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms