Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
FOXA1P55317 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.34■□□□□ 0.37
FOXA1P55317 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.34■□□□□ 0.37
FOXA1P55317 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
FOXA1P55317 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.34■□□□□ 0.37
FOXA1P55317 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.34■□□□□ 0.37
FOXA1P55317 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.34■□□□□ 0.37
FOXA1P55317 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.34■□□□□ 0.37
FOXA1P55317 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.34■□□□□ 0.37
FOXA1P55317 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.34■□□□□ 0.37
FOXA1P55317 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
FOXA1P55317 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.34■□□□□ 0.37
FOXA1P55317 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
FOXA1P55317 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA1P55317 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.34■□□□□ 0.37
FOXA1P55317 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.33■□□□□ 0.37
FOXA1P55317 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA1P55317 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
FOXA1P55317 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.33■□□□□ 0.37
FOXA1P55317 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA1P55317 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA1P55317 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.33■□□□□ 0.37
FOXA1P55317 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
FOXA1P55317 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.33■□□□□ 0.37
FOXA1P55317 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
FOXA1P55317 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
FOXA1P55317 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.33■□□□□ 0.36
FOXA1P55317 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.33■□□□□ 0.36
FOXA1P55317 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.33■□□□□ 0.36
FOXA1P55317 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.33■□□□□ 0.36
FOXA1P55317 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.33■□□□□ 0.36
FOXA1P55317 AC008687.5-201ENST00000593746 558 ntBASIC17.33■□□□□ 0.36
FOXA1P55317 AC079602.3-201ENST00000623931 403 ntBASIC17.33■□□□□ 0.36
FOXA1P55317 AL023973.1-201ENST00000624619 620 ntBASIC17.33■□□□□ 0.36
FOXA1P55317 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.33■□□□□ 0.36
FOXA1P55317 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
FOXA1P55317 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.33■□□□□ 0.36
FOXA1P55317 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.33■□□□□ 0.36
FOXA1P55317 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA1P55317 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
FOXA1P55317 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
FOXA1P55317 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 KRT8P47-201ENST00000604727 1398 ntBASIC17.32■□□□□ 0.36
FOXA1P55317 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
FOXA1P55317 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
FOXA1P55317 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXA1P55317 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXA1P55317 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
FOXA1P55317 AC113404.2-201ENST00000507884 177 ntBASIC17.32■□□□□ 0.36
FOXA1P55317 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
FOXA1P55317 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms