Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CDH12P55289 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH12P55289 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CDH12P55289 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CDH12P55289 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CDH12P55289 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
CDH12P55289 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CDH12P55289 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH12P55289 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.71■□□□□ 0.27
CDH12P55289 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.71■□□□□ 0.27
CDH12P55289 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH12P55289 EGLN1P1-201ENST00000531623 762 ntBASIC16.71■□□□□ 0.27
CDH12P55289 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CDH12P55289 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CDH12P55289 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH12P55289 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
CDH12P55289 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
CDH12P55289 KRT8P9-201ENST00000558927 1449 ntBASIC16.7■□□□□ 0.26
CDH12P55289 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
CDH12P55289 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
CDH12P55289 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.7■□□□□ 0.26
CDH12P55289 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.7■□□□□ 0.26
CDH12P55289 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 AC104390.1-201ENST00000555663 520 ntBASIC16.7■□□□□ 0.26
CDH12P55289 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.7■□□□□ 0.26
CDH12P55289 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CDH12P55289 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDH12P55289 AD000864.1-201ENST00000624076 2295 ntBASIC16.7■□□□□ 0.26
CDH12P55289 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.7■□□□□ 0.26
CDH12P55289 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CDH12P55289 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CDH12P55289 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.69■□□□□ 0.26
CDH12P55289 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.69■□□□□ 0.26
CDH12P55289 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.69■□□□□ 0.26
CDH12P55289 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
CDH12P55289 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
CDH12P55289 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDH12P55289 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CDH12P55289 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH12P55289 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms