Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
RPA3P35244 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.13■□□□□ 0.49
RPA3P35244 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RPA3P35244 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.12■□□□□ 0.49
RPA3P35244 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.12■□□□□ 0.49
RPA3P35244 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.12■□□□□ 0.49
RPA3P35244 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RPA3P35244 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.12■□□□□ 0.49
RPA3P35244 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.12■□□□□ 0.49
RPA3P35244 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
RPA3P35244 FAM87A-204ENST00000613235 858 ntBASIC18.12■□□□□ 0.49
RPA3P35244 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
RPA3P35244 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.12■□□□□ 0.49
RPA3P35244 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
RPA3P35244 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.12■□□□□ 0.49
RPA3P35244 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RPA3P35244 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.12■□□□□ 0.49
RPA3P35244 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
RPA3P35244 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RPA3P35244 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.11■□□□□ 0.49
RPA3P35244 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.11■□□□□ 0.49
RPA3P35244 MIR149-201ENST00000384879 89 ntBASIC18.11■□□□□ 0.49
RPA3P35244 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
RPA3P35244 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.11■□□□□ 0.49
RPA3P35244 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.11■□□□□ 0.49
RPA3P35244 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RPA3P35244 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.11■□□□□ 0.49
RPA3P35244 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.11■□□□□ 0.49
RPA3P35244 AL512604.3-201ENST00000569583 964 ntBASIC18.11■□□□□ 0.49
RPA3P35244 AC097493.4-201ENST00000641197 219 ntBASIC18.11■□□□□ 0.49
RPA3P35244 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.11■□□□□ 0.49
RPA3P35244 LINC01126-201ENST00000623515 1646 ntBASIC18.11■□□□□ 0.49
RPA3P35244 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
RPA3P35244 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
RPA3P35244 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RPA3P35244 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.11■□□□□ 0.49
RPA3P35244 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
RPA3P35244 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.1■□□□□ 0.49
RPA3P35244 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.1■□□□□ 0.49
RPA3P35244 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
RPA3P35244 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.1■□□□□ 0.49
RPA3P35244 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
RPA3P35244 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.1■□□□□ 0.49
RPA3P35244 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RPA3P35244 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.1■□□□□ 0.49
RPA3P35244 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RPA3P35244 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.1■□□□□ 0.49
RPA3P35244 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.1■□□□□ 0.49
RPA3P35244 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.1■□□□□ 0.49
RPA3P35244 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.1■□□□□ 0.49
RPA3P35244 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.1■□□□□ 0.49
RPA3P35244 MIR3180-5-201ENST00000583743 153 ntBASIC18.1■□□□□ 0.49
RPA3P35244 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.1■□□□□ 0.49
RPA3P35244 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.1■□□□□ 0.49
RPA3P35244 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RPA3P35244 CROCCP2-202ENST00000412962 2773 ntBASIC18.1■□□□□ 0.49
RPA3P35244 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.1■□□□□ 0.49
RPA3P35244 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
RPA3P35244 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.1■□□□□ 0.49
RPA3P35244 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.1■□□□□ 0.49
RPA3P35244 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.1■□□□□ 0.49
RPA3P35244 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RPA3P35244 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RPA3P35244 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms