Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.5■□□□□ 0.55
COL6A3P12111 AL135744.1-201ENST00000565098 629 ntBASIC18.5■□□□□ 0.55
COL6A3P12111 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.5■□□□□ 0.55
COL6A3P12111 AC004233.3-201ENST00000607794 1269 ntBASIC18.5■□□□□ 0.55
COL6A3P12111 AC084121.4-201ENST00000641598 221 ntBASIC18.5■□□□□ 0.55
COL6A3P12111 AF228730.8-201ENST00000642140 221 ntBASIC18.5■□□□□ 0.55
COL6A3P12111 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.5■□□□□ 0.55
COL6A3P12111 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL6A3P12111 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL6A3P12111 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.5■□□□□ 0.55
COL6A3P12111 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.5■□□□□ 0.55
COL6A3P12111 RHOQP1-201ENST00000555758 579 ntBASIC18.5■□□□□ 0.55
COL6A3P12111 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
COL6A3P12111 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.5■□□□□ 0.55
COL6A3P12111 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
COL6A3P12111 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.5■□□□□ 0.55
COL6A3P12111 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 KRT18P41-201ENST00000518924 1277 ntBASIC18.5■□□□□ 0.55
COL6A3P12111 SNX29P1-201ENST00000548357 1007 ntBASIC18.5■□□□□ 0.55
COL6A3P12111 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.5■□□□□ 0.55
COL6A3P12111 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL6A3P12111 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A3P12111 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL6A3P12111 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
COL6A3P12111 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A3P12111 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 DDX43P3-201ENST00000441064 443 ntBASIC18.49■□□□□ 0.55
COL6A3P12111 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.49■□□□□ 0.55
COL6A3P12111 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL6A3P12111 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A3P12111 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A3P12111 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL6A3P12111 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
COL6A3P12111 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A3P12111 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.49■□□□□ 0.55
COL6A3P12111 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.49■□□□□ 0.55
COL6A3P12111 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.49■□□□□ 0.55
COL6A3P12111 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL6A3P12111 AL109936.8-201ENST00000641772 604 ntBASIC18.48■□□□□ 0.55
COL6A3P12111 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.48■□□□□ 0.55
COL6A3P12111 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL6A3P12111 MTMR9LP-203ENST00000426597 1545 ntBASIC18.48■□□□□ 0.55
COL6A3P12111 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL6A3P12111 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC18.48■□□□□ 0.55
COL6A3P12111 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.48■□□□□ 0.55
COL6A3P12111 SPDYE14P-201ENST00000442619 822 ntBASIC18.48■□□□□ 0.55
COL6A3P12111 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.48■□□□□ 0.55
COL6A3P12111 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL6A3P12111 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A3P12111 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A3P12111 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.47■□□□□ 0.55
COL6A3P12111 MIR149-201ENST00000384879 89 ntBASIC18.47■□□□□ 0.55
COL6A3P12111 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.47■□□□□ 0.55
COL6A3P12111 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A3P12111 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A3P12111 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.47■□□□□ 0.55
COL6A3P12111 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.47■□□□□ 0.55
COL6A3P12111 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.47■□□□□ 0.55
COL6A3P12111 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.47■□□□□ 0.55
COL6A3P12111 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A3P12111 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL6A3P12111 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.47■□□□□ 0.55
COL6A3P12111 TSSK5P-201ENST00000423978 907 ntBASIC18.47■□□□□ 0.55
COL6A3P12111 AL512638.1-201ENST00000457493 794 ntBASIC18.47■□□□□ 0.55
COL6A3P12111 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.47■□□□□ 0.55
COL6A3P12111 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms