Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.07■□□□□ 0.8
GGPS1O95749 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
GGPS1O95749 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
GGPS1O95749 AC243591.1-201ENST00000452967 1364 ntBASIC20.07■□□□□ 0.8
GGPS1O95749 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.06■□□□□ 0.8
GGPS1O95749 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
GGPS1O95749 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
GGPS1O95749 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
GGPS1O95749 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.06■□□□□ 0.8
GGPS1O95749 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.06■□□□□ 0.8
GGPS1O95749 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.06■□□□□ 0.8
GGPS1O95749 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
GGPS1O95749 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.06■□□□□ 0.8
GGPS1O95749 AC093909.1-201ENST00000504731 1122 ntBASIC20.06■□□□□ 0.8
GGPS1O95749 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.06■□□□□ 0.8
GGPS1O95749 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.06■□□□□ 0.8
GGPS1O95749 AC021087.4-201ENST00000563761 564 ntBASIC20.06■□□□□ 0.8
GGPS1O95749 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
GGPS1O95749 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.06■□□□□ 0.8
GGPS1O95749 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.06■□□□□ 0.8
GGPS1O95749 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.06■□□□□ 0.8
GGPS1O95749 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.06■□□□□ 0.8
GGPS1O95749 FAM215A-202ENST00000632077 792 ntBASIC20.06■□□□□ 0.8
GGPS1O95749 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.06■□□□□ 0.8
GGPS1O95749 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.06■□□□□ 0.8
GGPS1O95749 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
GGPS1O95749 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.05■□□□□ 0.8
GGPS1O95749 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
GGPS1O95749 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
GGPS1O95749 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
GGPS1O95749 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
GGPS1O95749 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 SLC25A1P1-201ENST00000528351 927 ntBASIC20.05■□□□□ 0.8
GGPS1O95749 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
GGPS1O95749 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
GGPS1O95749 AF228730.7-201ENST00000641842 219 ntBASIC20.05■□□□□ 0.8
GGPS1O95749 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.05■□□□□ 0.8
GGPS1O95749 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
GGPS1O95749 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 AC090164.3-201ENST00000610780 2143 ntBASIC20.05■□□□□ 0.8
GGPS1O95749 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
GGPS1O95749 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.04■□□□□ 0.8
GGPS1O95749 AC010460.3-201ENST00000511359 1579 ntBASIC20.04■□□□□ 0.8
GGPS1O95749 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 AL356309.3-201ENST00000624132 1934 ntBASIC20.04■□□□□ 0.8
GGPS1O95749 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
GGPS1O95749 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.04■□□□□ 0.8
GGPS1O95749 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.04■□□□□ 0.8
GGPS1O95749 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.04■□□□□ 0.8
GGPS1O95749 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
GGPS1O95749 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GGPS1O95749 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.04■□□□□ 0.8
GGPS1O95749 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
GGPS1O95749 AC096633.1-201ENST00000422446 749 ntBASIC20.04■□□□□ 0.8
GGPS1O95749 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.04■□□□□ 0.8
GGPS1O95749 DUTP2-201ENST00000519164 463 ntBASIC20.04■□□□□ 0.8
GGPS1O95749 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.04■□□□□ 0.8
GGPS1O95749 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms