Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM38O00635 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM38O00635 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM38O00635 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRIM38O00635 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM38O00635 AC034236.2-201ENST00000606662 1610 ntBASIC18.05■□□□□ 0.48
TRIM38O00635 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRIM38O00635 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
TRIM38O00635 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM38O00635 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM38O00635 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.04■□□□□ 0.48
TRIM38O00635 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.04■□□□□ 0.48
TRIM38O00635 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 AC079781.3-201ENST00000449110 356 ntBASIC18.04■□□□□ 0.48
TRIM38O00635 AC104819.1-201ENST00000504587 486 ntBASIC18.04■□□□□ 0.48
TRIM38O00635 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.04■□□□□ 0.48
TRIM38O00635 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM38O00635 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM38O00635 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM38O00635 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM38O00635 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM38O00635 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
TRIM38O00635 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM38O00635 AC074051.2-201ENST00000565115 352 ntBASIC18.03■□□□□ 0.48
TRIM38O00635 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TRIM38O00635 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
TRIM38O00635 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.03■□□□□ 0.48
TRIM38O00635 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM38O00635 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.03■□□□□ 0.48
TRIM38O00635 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
TRIM38O00635 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM38O00635 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM38O00635 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM38O00635 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM38O00635 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM38O00635 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM38O00635 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM38O00635 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM38O00635 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM38O00635 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
TRIM38O00635 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM38O00635 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
TRIM38O00635 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRIM38O00635 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM38O00635 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM38O00635 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM38O00635 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM38O00635 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM38O00635 LINC00167-201ENST00000530583 1419 ntBASIC18.02■□□□□ 0.48
TRIM38O00635 AL160237.2-201ENST00000556165 472 ntBASIC18.02■□□□□ 0.48
TRIM38O00635 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM38O00635 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM38O00635 MIR3180-4-201ENST00000582223 153 ntBASIC18.02■□□□□ 0.48
TRIM38O00635 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.02■□□□□ 0.48
TRIM38O00635 LINC01711-201ENST00000598340 967 ntBASIC18.02■□□□□ 0.48
TRIM38O00635 GPR32P1-201ENST00000601788 811 ntBASIC18.02■□□□□ 0.48
TRIM38O00635 AC138894.3-201ENST00000603787 634 ntBASIC18.02■□□□□ 0.48
TRIM38O00635 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms