Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 NSUN5P1-202ENST00000421140 1535 ntBASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 NSUN5P2-203ENST00000457352 1529 ntBASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC141586.3-201ENST00000562166 1838 ntBASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 KRT18P41-201ENST00000518924 1277 ntBASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TMX2-CTNND1H3BSU7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
TMX2-CTNND1H3BSU7 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
TMX2-CTNND1H3BSU7 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TMX2-CTNND1H3BSU7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.58■□□□□ 0.41
TMX2-CTNND1H3BSU7 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TMX2-CTNND1H3BSU7 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.41
TMX2-CTNND1H3BSU7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TMX2-CTNND1H3BSU7 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 SLC25A6P4-201ENST00000586535 553 ntBASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 Z98044.1-201ENST00000632503 1764 ntBASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.58■□□□□ 0.4
TMX2-CTNND1H3BSU7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.57■□□□□ 0.4
TMX2-CTNND1H3BSU7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms