Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 RPL28-204ENST00000431533 590 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 SPDYE14P-201ENST00000442619 822 ntBASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 POLE2-203ENST00000553805 496 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC85CA6NKD9 UXT-AS1-201ENST00000590504 1525 ntBASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 AC022144.1-201ENST00000602255 1580 ntBASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 IGHV3-62-201ENST00000520057 340 ntBASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 AC027369.6-201ENST00000525520 931 ntBASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 AC140912.1-201ENST00000577171 1054 ntBASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 RN7SL219P-201ENST00000582872 296 ntBASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC85CA6NKD9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 AC103564.2-201ENST00000432853 1299 ntBASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 KRT8P23-201ENST00000560090 1207 ntBASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 AC106886.1-201ENST00000568660 600 ntBASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC85CA6NKD9 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC85CA6NKD9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC85CA6NKD9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.74
CCDC85CA6NKD9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
CCDC85CA6NKD9 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC85CA6NKD9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC85CA6NKD9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC85CA6NKD9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 AP006294.1-201ENST00000415407 339 ntBASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 AL590560.3-201ENST00000623350 461 ntBASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 AC100757.3-201ENST00000622361 1406 ntBASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 FEM1AP3-201ENST00000403722 1741 ntBASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms