Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 VENTXP7-201ENST00000475503 772 ntBASIC17.8■□□□□ 0.44
VPS35Q96QK1 AC011840.4-201ENST00000578471 627 ntBASIC17.8■□□□□ 0.44
VPS35Q96QK1 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 AC092329.2-201ENST00000598402 547 ntBASIC17.8■□□□□ 0.44
VPS35Q96QK1 AC092119.3-201ENST00000612618 583 ntBASIC17.8■□□□□ 0.44
VPS35Q96QK1 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS35Q96QK1 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 AC138028.4-201ENST00000564984 1845 ntBASIC17.79■□□□□ 0.44
VPS35Q96QK1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 TOB2P1-201ENST00000469761 992 ntBASIC17.79■□□□□ 0.44
VPS35Q96QK1 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.79■□□□□ 0.44
VPS35Q96QK1 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS35Q96QK1 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS35Q96QK1 AC233702.3-201ENST00000578656 1387 ntBASIC17.79■□□□□ 0.44
VPS35Q96QK1 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms