Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AC005332.3-201ENST00000589904 676 ntBASIC21.13■□□□□ 0.97
BRF1Q92994 GPR32P1-201ENST00000601788 811 ntBASIC21.13■□□□□ 0.97
BRF1Q92994 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BRF1Q92994 HTR7P1-202ENST00000624664 4411 ntBASIC21.13■□□□□ 0.97
BRF1Q92994 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.12■□□□□ 0.97
BRF1Q92994 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
BRF1Q92994 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
BRF1Q92994 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.12■□□□□ 0.97
BRF1Q92994 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
BRF1Q92994 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.12■□□□□ 0.97
BRF1Q92994 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.12■□□□□ 0.97
BRF1Q92994 FAM210CP-201ENST00000445714 574 ntBASIC21.12■□□□□ 0.97
BRF1Q92994 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.12■□□□□ 0.97
BRF1Q92994 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.12■□□□□ 0.97
BRF1Q92994 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.12■□□□□ 0.97
BRF1Q92994 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.12■□□□□ 0.97
BRF1Q92994 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.12■□□□□ 0.97
BRF1Q92994 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.12■□□□□ 0.97
BRF1Q92994 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
BRF1Q92994 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.12■□□□□ 0.97
BRF1Q92994 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.12■□□□□ 0.97
BRF1Q92994 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.12■□□□□ 0.97
BRF1Q92994 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.12■□□□□ 0.97
BRF1Q92994 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
BRF1Q92994 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
BRF1Q92994 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
BRF1Q92994 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.11■□□□□ 0.97
BRF1Q92994 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.11■□□□□ 0.97
BRF1Q92994 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
BRF1Q92994 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
BRF1Q92994 TSPY12P-201ENST00000421279 868 ntBASIC21.11■□□□□ 0.97
BRF1Q92994 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.11■□□□□ 0.97
BRF1Q92994 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.11■□□□□ 0.97
BRF1Q92994 AL390719.2-201ENST00000606993 987 ntBASIC21.11■□□□□ 0.97
BRF1Q92994 AC009154.2-201ENST00000621177 724 ntBASIC21.11■□□□□ 0.97
BRF1Q92994 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
BRF1Q92994 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.11■□□□□ 0.97
BRF1Q92994 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 Z83836.1-201ENST00000624605 1642 ntBASIC21.11■□□□□ 0.97
BRF1Q92994 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRF1Q92994 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC21.11■□□□□ 0.97
BRF1Q92994 KRT8P47-201ENST00000604727 1398 ntBASIC21.1■□□□□ 0.97
BRF1Q92994 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.1■□□□□ 0.97
BRF1Q92994 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
BRF1Q92994 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
BRF1Q92994 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.1■□□□□ 0.97
BRF1Q92994 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.1■□□□□ 0.97
BRF1Q92994 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.1■□□□□ 0.97
BRF1Q92994 AL049597.2-201ENST00000565575 961 ntBASIC21.1■□□□□ 0.97
BRF1Q92994 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.1■□□□□ 0.97
BRF1Q92994 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.1■□□□□ 0.97
BRF1Q92994 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
BRF1Q92994 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
BRF1Q92994 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
BRF1Q92994 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.1■□□□□ 0.97
BRF1Q92994 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRF1Q92994 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms