Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 AKR1C7P-201ENST00000305623 895 ntBASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 COX10-202ENST00000429152 875 ntTSL 2 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 AC093909.1-201ENST00000504731 1122 ntBASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 AC112698.1-201ENST00000510299 916 ntBASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 RNA5SP419-201ENST00000515908 135 ntBASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 DUTP2-201ENST00000519164 463 ntBASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-3Q8TAU0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 AC106730.1-201ENST00000566722 1090 ntBASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-3Q8TAU0 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 MOK-208ENST00000519058 917 ntTSL 2 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 SLC25A1P1-201ENST00000528351 927 ntBASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 TERC-201ENST00000602385 541 ntBASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 AC067852.2-201ENST00000590513 2313 ntBASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NKX2-3Q8TAU0 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 GUSBP12-201ENST00000513727 720 ntBASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-3Q8TAU0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms