Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.65■■□□□ 1.06
BRCA1P38398 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
BRCA1P38398 GPS2P2-201ENST00000430745 888 ntBASIC21.65■■□□□ 1.06
BRCA1P38398 TSPY16P-201ENST00000449843 468 ntBASIC21.65■■□□□ 1.06
BRCA1P38398 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.65■■□□□ 1.06
BRCA1P38398 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 ESPNP-201ENST00000270691 2015 ntBASIC21.65■■□□□ 1.06
BRCA1P38398 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
BRCA1P38398 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRCA1P38398 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
BRCA1P38398 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.64■■□□□ 1.06
BRCA1P38398 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
BRCA1P38398 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
BRCA1P38398 KRT8P48-201ENST00000515599 1220 ntBASIC21.64■■□□□ 1.06
BRCA1P38398 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.64■■□□□ 1.06
BRCA1P38398 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.64■■□□□ 1.06
BRCA1P38398 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.64■■□□□ 1.06
BRCA1P38398 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
BRCA1P38398 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
BRCA1P38398 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.64■■□□□ 1.06
BRCA1P38398 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
BRCA1P38398 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
BRCA1P38398 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
BRCA1P38398 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.64■■□□□ 1.05
BRCA1P38398 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
BRCA1P38398 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRCA1P38398 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
BRCA1P38398 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRCA1P38398 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
BRCA1P38398 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRCA1P38398 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
BRCA1P38398 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
BRCA1P38398 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.64■■□□□ 1.05
BRCA1P38398 ACTG1P4-201ENST00000425123 1122 ntBASIC21.64■■□□□ 1.05
BRCA1P38398 SPDYE11-202ENST00000450699 704 ntBASIC21.64■■□□□ 1.05
BRCA1P38398 TIMM8BP1-201ENST00000452384 211 ntBASIC21.64■■□□□ 1.05
BRCA1P38398 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.64■■□□□ 1.05
BRCA1P38398 SPDYE9P-201ENST00000570642 692 ntBASIC21.64■■□□□ 1.05
BRCA1P38398 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.64■■□□□ 1.05
BRCA1P38398 SPDYE10P-202ENST00000612005 668 ntBASIC21.64■■□□□ 1.05
BRCA1P38398 SPDYE8P-202ENST00000612377 668 ntBASIC21.64■■□□□ 1.05
BRCA1P38398 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
BRCA1P38398 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRCA1P38398 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.64■■□□□ 1.05
BRCA1P38398 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
BRCA1P38398 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
BRCA1P38398 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
BRCA1P38398 CXCL1P1-201ENST00000502804 216 ntBASIC21.63■■□□□ 1.05
BRCA1P38398 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC21.63■■□□□ 1.05
BRCA1P38398 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
BRCA1P38398 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.63■■□□□ 1.05
BRCA1P38398 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.63■■□□□ 1.05
BRCA1P38398 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRCA1P38398 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
BRCA1P38398 TFAMP1-201ENST00000412727 736 ntBASIC21.62■■□□□ 1.05
BRCA1P38398 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.62■■□□□ 1.05
BRCA1P38398 AC069335.1-201ENST00000489972 472 ntBASIC21.62■■□□□ 1.05
BRCA1P38398 RNA5SP421-201ENST00000516864 134 ntBASIC21.62■■□□□ 1.05
BRCA1P38398 AC112191.1-201ENST00000523689 701 ntBASIC21.62■■□□□ 1.05
BRCA1P38398 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.62■■□□□ 1.05
BRCA1P38398 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRCA1P38398 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.62■■□□□ 1.05
BRCA1P38398 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC21.62■■□□□ 1.05
BRCA1P38398 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRCA1P38398 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
BRCA1P38398 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
BRCA1P38398 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRCA1P38398 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.62■■□□□ 1.05
BRCA1P38398 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.62■■□□□ 1.05
BRCA1P38398 OR8S1-201ENST00000310194 1080 ntBASIC21.62■■□□□ 1.05
BRCA1P38398 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRCA1P38398 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
BRCA1P38398 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.62■■□□□ 1.05
BRCA1P38398 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.62■■□□□ 1.05
BRCA1P38398 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.62■■□□□ 1.05
BRCA1P38398 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
BRCA1P38398 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.62■■□□□ 1.05
BRCA1P38398 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRCA1P38398 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRCA1P38398 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRCA1P38398 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms