Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AL645929.1-201ENST00000420084 975 ntBASIC20.76■□□□□ 0.91
CTDNEP1O95476 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.76■□□□□ 0.91
CTDNEP1O95476 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.76■□□□□ 0.91
CTDNEP1O95476 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.76■□□□□ 0.91
CTDNEP1O95476 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.76■□□□□ 0.91
CTDNEP1O95476 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.76■□□□□ 0.91
CTDNEP1O95476 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.75■□□□□ 0.91
CTDNEP1O95476 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.75■□□□□ 0.91
CTDNEP1O95476 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.75■□□□□ 0.91
CTDNEP1O95476 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.75■□□□□ 0.91
CTDNEP1O95476 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.75■□□□□ 0.91
CTDNEP1O95476 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.75■□□□□ 0.91
CTDNEP1O95476 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
CTDNEP1O95476 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTDNEP1O95476 LTB4R2-202ENST00000528054 3092 ntBASIC20.74■□□□□ 0.91
CTDNEP1O95476 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 AL845331.1-201ENST00000424978 1190 ntBASIC20.74■□□□□ 0.91
CTDNEP1O95476 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 DDX43P3-201ENST00000441064 443 ntBASIC20.74■□□□□ 0.91
CTDNEP1O95476 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 RN7SL606P-201ENST00000472779 293 ntBASIC20.74■□□□□ 0.91
CTDNEP1O95476 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 AL136038.3-201ENST00000561909 1096 ntBASIC20.74■□□□□ 0.91
CTDNEP1O95476 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDNEP1O95476 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CTDNEP1O95476 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.73■□□□□ 0.91
CTDNEP1O95476 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CTDNEP1O95476 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
CTDNEP1O95476 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 FAM210CP-201ENST00000445714 574 ntBASIC20.73■□□□□ 0.91
CTDNEP1O95476 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.73■□□□□ 0.91
CTDNEP1O95476 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.73■□□□□ 0.91
CTDNEP1O95476 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.73■□□□□ 0.91
CTDNEP1O95476 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.73■□□□□ 0.91
CTDNEP1O95476 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.73■□□□□ 0.91
CTDNEP1O95476 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTDNEP1O95476 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms