Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP4O75161 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NPHP4O75161 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP4O75161 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC25.04■■□□□ 1.6
NPHP4O75161 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP4O75161 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP4O75161 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC25.04■■□□□ 1.6
NPHP4O75161 AC008761.3-201ENST00000624803 892 ntBASIC25.04■■□□□ 1.6
NPHP4O75161 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP4O75161 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
NPHP4O75161 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP4O75161 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC25.04■■□□□ 1.6
NPHP4O75161 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC25.04■■□□□ 1.6
NPHP4O75161 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NPHP4O75161 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 OR8S1-201ENST00000310194 1080 ntBASIC25.03■■□□□ 1.6
NPHP4O75161 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 CENPM-205ENST00000404067 905 ntTSL 3 BASIC25.03■■□□□ 1.6
NPHP4O75161 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC25.03■■□□□ 1.6
NPHP4O75161 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC25.03■■□□□ 1.6
NPHP4O75161 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC25.03■■□□□ 1.6
NPHP4O75161 AC112191.1-201ENST00000523689 701 ntBASIC25.03■■□□□ 1.6
NPHP4O75161 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC25.03■■□□□ 1.6
NPHP4O75161 AL008721.1-201ENST00000609964 604 ntBASIC25.03■■□□□ 1.6
NPHP4O75161 AL158211.5-201ENST00000623583 2518 ntBASIC25.03■■□□□ 1.6
NPHP4O75161 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC25.03■■□□□ 1.6
NPHP4O75161 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC25.03■■□□□ 1.6
NPHP4O75161 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC25.03■■□□□ 1.6
NPHP4O75161 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC25.03■■□□□ 1.6
NPHP4O75161 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC25.03■■□□□ 1.6
NPHP4O75161 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 AL355306.1-201ENST00000415580 579 ntBASIC25.03■■□□□ 1.6
NPHP4O75161 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
NPHP4O75161 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC25.03■■□□□ 1.6
NPHP4O75161 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC25.03■■□□□ 1.6
NPHP4O75161 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 CYB561-216ENST00000582297 897 ntTSL 3 BASIC25.03■■□□□ 1.6
NPHP4O75161 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC25.03■■□□□ 1.6
NPHP4O75161 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
NPHP4O75161 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NPHP4O75161 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC25.02■■□□□ 1.6
NPHP4O75161 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
NPHP4O75161 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP4O75161 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC25.02■■□□□ 1.6
NPHP4O75161 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC25.02■■□□□ 1.6
NPHP4O75161 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
NPHP4O75161 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP4O75161 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP4O75161 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC25.02■■□□□ 1.6
NPHP4O75161 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP4O75161 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
NPHP4O75161 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC25.02■■□□□ 1.6
NPHP4O75161 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC25.02■■□□□ 1.6
NPHP4O75161 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC25.02■■□□□ 1.6
NPHP4O75161 AC019129.2-201ENST00000609837 1235 ntBASIC25.02■■□□□ 1.6
NPHP4O75161 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC25.02■■□□□ 1.6
NPHP4O75161 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NPHP4O75161 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC25.01■■□□□ 1.6
NPHP4O75161 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP4O75161 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP4O75161 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP4O75161 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP4O75161 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP4O75161 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP4O75161 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC25.01■■□□□ 1.59
NPHP4O75161 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
NPHP4O75161 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC25.01■■□□□ 1.59
NPHP4O75161 GATB-205ENST00000508611 605 ntTSL 2 BASIC25.01■■□□□ 1.59
NPHP4O75161 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NPHP4O75161 AC099522.2-201ENST00000607001 744 ntBASIC25.01■■□□□ 1.59
NPHP4O75161 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC25.01■■□□□ 1.59
NPHP4O75161 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC25.01■■□□□ 1.59
NPHP4O75161 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC25.01■■□□□ 1.59
NPHP4O75161 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC25.01■■□□□ 1.59
NPHP4O75161 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC25■■□□□ 1.59
NPHP4O75161 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
NPHP4O75161 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 MIR943-201ENST00000401286 94 ntBASIC25■■□□□ 1.59
NPHP4O75161 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC25■■□□□ 1.59
NPHP4O75161 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC25■■□□□ 1.59
NPHP4O75161 KRT8P48-201ENST00000515599 1220 ntBASIC25■■□□□ 1.59
NPHP4O75161 AL512356.2-201ENST00000546955 174 ntBASIC25■■□□□ 1.59
NPHP4O75161 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms