Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.47□□□□□ -0.09
HMGB3O15347 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 AL096828.2-201ENST00000567259 1965 ntBASIC14.47□□□□□ -0.09
HMGB3O15347 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.09
HMGB3O15347 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
HMGB3O15347 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC14.46□□□□□ -0.09
HMGB3O15347 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.46□□□□□ -0.09
HMGB3O15347 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 AC099343.3-201ENST00000605834 2503 ntBASIC14.46□□□□□ -0.09
HMGB3O15347 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
HMGB3O15347 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.46□□□□□ -0.09
HMGB3O15347 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
HMGB3O15347 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
HMGB3O15347 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 AC006015.1-201ENST00000429970 570 ntBASIC14.46□□□□□ -0.09
HMGB3O15347 KRT18P5-201ENST00000436075 1291 ntBASIC14.46□□□□□ -0.09
HMGB3O15347 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC14.46□□□□□ -0.09
HMGB3O15347 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 KRT8P45-201ENST00000414328 1447 ntBASIC14.46□□□□□ -0.09
HMGB3O15347 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HMGB3O15347 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.46□□□□□ -0.09
HMGB3O15347 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.46□□□□□ -0.1
HMGB3O15347 ZEB2-246ENST00000638128 8932 ntTSL 5 BASIC14.46□□□□□ -0.1
HMGB3O15347 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
HMGB3O15347 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
HMGB3O15347 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HMGB3O15347 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HMGB3O15347 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HMGB3O15347 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.46□□□□□ -0.1
HMGB3O15347 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.45□□□□□ -0.1
HMGB3O15347 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HMGB3O15347 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HMGB3O15347 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.45□□□□□ -0.1
HMGB3O15347 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.45□□□□□ -0.1
HMGB3O15347 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.45□□□□□ -0.1
HMGB3O15347 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HMGB3O15347 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC14.45□□□□□ -0.1
HMGB3O15347 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC14.45□□□□□ -0.1
HMGB3O15347 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC14.45□□□□□ -0.1
HMGB3O15347 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC14.45□□□□□ -0.1
HMGB3O15347 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.45□□□□□ -0.1
HMGB3O15347 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC14.45□□□□□ -0.1
HMGB3O15347 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.45□□□□□ -0.1
HMGB3O15347 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HMGB3O15347 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
HMGB3O15347 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.45□□□□□ -0.1
HMGB3O15347 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
HMGB3O15347 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGB3O15347 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB3O15347 KRT8P32-201ENST00000512863 1461 ntBASIC14.44□□□□□ -0.1
HMGB3O15347 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms