Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 AL590627.1-203ENST00000421194 1026 ntBASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 SCARNA2-201ENST00000458748 420 ntBASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 AL031598.1-201ENST00000561511 1773 ntBASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.74■□□□□ 0.91
CTDP1Q9Y5B0 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 RBM17P3-201ENST00000417687 1192 ntBASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 KRT18P67-201ENST00000432816 1264 ntBASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 AC011467.2-201ENST00000598425 242 ntBASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTDP1Q9Y5B0 INTS4P1-201ENST00000438455 1935 ntBASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 AL355877.3-201ENST00000622820 899 ntBASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDP1Q9Y5B0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 AL031284.1-201ENST00000419297 478 ntBASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.71■□□□□ 0.91
CTDP1Q9Y5B0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms