Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 KLF4P1-201ENST00000412782 1185 ntBASIC16.56■□□□□ 0.24
CHD8Q9HCK8 GIMAP3P-201ENST00000495150 836 ntBASIC16.56■□□□□ 0.24
CHD8Q9HCK8 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 AC009118.2-201ENST00000613275 655 ntBASIC16.56■□□□□ 0.24
CHD8Q9HCK8 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 SPDYE11-202ENST00000450699 704 ntBASIC16.56■□□□□ 0.24
CHD8Q9HCK8 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 AC004890.2-204ENST00000481968 304 ntBASIC16.56■□□□□ 0.24
CHD8Q9HCK8 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 SPDYE9P-201ENST00000570642 692 ntBASIC16.56■□□□□ 0.24
CHD8Q9HCK8 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 SPDYE10P-202ENST00000612005 668 ntBASIC16.56■□□□□ 0.24
CHD8Q9HCK8 SPDYE8P-202ENST00000612377 668 ntBASIC16.56■□□□□ 0.24
CHD8Q9HCK8 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHD8Q9HCK8 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 AC007064.4-201ENST00000637740 555 ntBASIC16.55■□□□□ 0.24
CHD8Q9HCK8 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHD8Q9HCK8 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 SDHAP2-201ENST00000455183 2001 ntBASIC16.54■□□□□ 0.24
CHD8Q9HCK8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.54■□□□□ 0.24
CHD8Q9HCK8 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 AL512638.1-201ENST00000457493 794 ntBASIC16.54■□□□□ 0.24
CHD8Q9HCK8 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 AC106886.1-201ENST00000568660 600 ntBASIC16.54■□□□□ 0.24
CHD8Q9HCK8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.54■□□□□ 0.24
CHD8Q9HCK8 AC010460.3-201ENST00000511359 1579 ntBASIC16.53■□□□□ 0.24
CHD8Q9HCK8 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHD8Q9HCK8 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHD8Q9HCK8 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHD8Q9HCK8 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CHD8Q9HCK8 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHD8Q9HCK8 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
CHD8Q9HCK8 TP53TG3HP-202ENST00000569755 579 ntBASIC16.53■□□□□ 0.24
CHD8Q9HCK8 RN7SL190P-201ENST00000582519 257 ntBASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms