Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 LINC02262-201ENST00000416680 735 ntTSL 3 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 PMS2P2-201ENST00000425039 1128 ntBASIC26.67■■□□□ 1.86
SENP3Q9H4L4 IGHV3-47-201ENST00000425060 335 ntBASIC26.67■■□□□ 1.86
SENP3Q9H4L4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 LYSMD2-203ENST00000558126 775 ntTSL 5 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 AC119751.7-201ENST00000600494 245 ntBASIC26.67■■□□□ 1.86
SENP3Q9H4L4 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 AC140725.3-201ENST00000616193 880 ntBASIC26.67■■□□□ 1.86
SENP3Q9H4L4 AC090772.4-201ENST00000623599 362 ntBASIC26.67■■□□□ 1.86
SENP3Q9H4L4 AL158212.4-201ENST00000624062 1286 ntBASIC26.67■■□□□ 1.86
SENP3Q9H4L4 SATB1-AS1-242ENST00000627496 807 ntTSL 5 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 GCNT7-202ENST00000617620 1355 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3Q9H4L4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 Z82202.1-201ENST00000623446 1880 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AL354692.1-201ENST00000423044 315 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AL137802.2-201ENST00000562878 1110 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AP001005.1-201ENST00000571755 1248 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 FAM72A-208ENST00000607379 1139 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AL354872.2-201ENST00000607679 466 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AL592071.1-201ENST00000611956 408 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 U6.48-201ENST00000618523 106 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AC106858.1-201ENST00000637497 429 ntBASIC26.66■■□□□ 1.86
SENP3Q9H4L4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 AC100803.1-201ENST00000501440 1380 ntTSL 2 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC26.66■■□□□ 1.86
SENP3Q9H4L4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 NSUN5P1-202ENST00000421140 1535 ntBASIC26.65■■□□□ 1.86
SENP3Q9H4L4 NSUN5P2-203ENST00000457352 1529 ntBASIC26.65■■□□□ 1.86
SENP3Q9H4L4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 SEC61G-202ENST00000395535 459 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 MUPP-201ENST00000438111 566 ntBASIC26.65■■□□□ 1.86
SENP3Q9H4L4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 HYI-AS1-201ENST00000444386 545 ntTSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 RPL22L1-202ENST00000463836 506 ntAPPRIS ALT1 TSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 AC095050.1-201ENST00000502661 905 ntTSL 5 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 LNX1-AS2-202ENST00000509974 628 ntTSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 AC080080.2-201ENST00000624307 590 ntBASIC26.65■■□□□ 1.86
SENP3Q9H4L4 TTTY7-201ENST00000276770 1367 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 TTTY7B-201ENST00000276779 1367 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3Q9H4L4 PMS2P7-201ENST00000506558 1336 ntBASIC26.65■■□□□ 1.86
SENP3Q9H4L4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
SENP3Q9H4L4 AL512353.2-201ENST00000448759 1962 ntBASIC26.64■■□□□ 1.86
SENP3Q9H4L4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SENP3Q9H4L4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC26.64■■□□□ 1.86
SENP3Q9H4L4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SENP3Q9H4L4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC26.64■■□□□ 1.86
SENP3Q9H4L4 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
SENP3Q9H4L4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
SENP3Q9H4L4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms