Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
NKX3-1Q99801 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.71■□□□□ 0.1
NKX3-1Q99801 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.71■□□□□ 0.1
NKX3-1Q99801 AC009102.3-201ENST00000623118 1491 ntBASIC15.71■□□□□ 0.1
NKX3-1Q99801 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.1
NKX3-1Q99801 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
NKX3-1Q99801 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
NKX3-1Q99801 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.71■□□□□ 0.1
NKX3-1Q99801 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
NKX3-1Q99801 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 AL355355.2-201ENST00000442321 338 ntBASIC15.7■□□□□ 0.1
NKX3-1Q99801 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 NUDT16P1-203ENST00000513809 620 ntBASIC15.7■□□□□ 0.1
NKX3-1Q99801 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 REXO1L10P-201ENST00000615707 1290 ntBASIC15.7■□□□□ 0.1
NKX3-1Q99801 REXO1L12P-201ENST00000622156 912 ntBASIC15.7■□□□□ 0.1
NKX3-1Q99801 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.7■□□□□ 0.1
NKX3-1Q99801 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX3-1Q99801 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 AC100803.2-201ENST00000562459 1963 ntBASIC15.69■□□□□ 0.1
NKX3-1Q99801 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.69■□□□□ 0.1
NKX3-1Q99801 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 CYGB-204ENST00000589342 815 ntTSL 3 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NKX3-1Q99801 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
NKX3-1Q99801 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms