Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDX2Q99626 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.64■□□□□ 0.57
CDX2Q99626 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDX2Q99626 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.64■□□□□ 0.57
CDX2Q99626 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.64■□□□□ 0.57
CDX2Q99626 AL671277.1-201ENST00000429656 993 ntBASIC18.64■□□□□ 0.57
CDX2Q99626 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CDX2Q99626 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.64■□□□□ 0.57
CDX2Q99626 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.64■□□□□ 0.57
CDX2Q99626 SPDYE11-202ENST00000450699 704 ntBASIC18.64■□□□□ 0.57
CDX2Q99626 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.64■□□□□ 0.57
CDX2Q99626 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.64■□□□□ 0.57
CDX2Q99626 SPDYE9P-201ENST00000570642 692 ntBASIC18.64■□□□□ 0.57
CDX2Q99626 SPDYE10P-202ENST00000612005 668 ntBASIC18.64■□□□□ 0.57
CDX2Q99626 SPDYE8P-202ENST00000612377 668 ntBASIC18.64■□□□□ 0.57
CDX2Q99626 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.64■□□□□ 0.57
CDX2Q99626 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.64■□□□□ 0.57
CDX2Q99626 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDX2Q99626 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CDX2Q99626 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.63■□□□□ 0.57
CDX2Q99626 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CDX2Q99626 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CDX2Q99626 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 FAM86C2P-203ENST00000528684 1004 ntBASIC18.63■□□□□ 0.57
CDX2Q99626 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.63■□□□□ 0.57
CDX2Q99626 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.63■□□□□ 0.57
CDX2Q99626 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.63■□□□□ 0.57
CDX2Q99626 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 CU639417.3-201ENST00000624240 1404 ntBASIC18.63■□□□□ 0.57
CDX2Q99626 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CDX2Q99626 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.63■□□□□ 0.57
CDX2Q99626 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDX2Q99626 AC132938.5-201ENST00000624980 1813 ntBASIC18.63■□□□□ 0.57
CDX2Q99626 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.62■□□□□ 0.57
CDX2Q99626 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.62■□□□□ 0.57
CDX2Q99626 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.62■□□□□ 0.57
CDX2Q99626 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.62■□□□□ 0.57
CDX2Q99626 AL355306.1-201ENST00000415580 579 ntBASIC18.62■□□□□ 0.57
CDX2Q99626 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.62■□□□□ 0.57
CDX2Q99626 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.62■□□□□ 0.57
CDX2Q99626 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.62■□□□□ 0.57
CDX2Q99626 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.62■□□□□ 0.57
CDX2Q99626 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.62■□□□□ 0.57
CDX2Q99626 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.62■□□□□ 0.57
CDX2Q99626 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.62■□□□□ 0.57
CDX2Q99626 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.62■□□□□ 0.57
CDX2Q99626 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.62■□□□□ 0.57
CDX2Q99626 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.62■□□□□ 0.57
CDX2Q99626 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 AC012676.1-201ENST00000574705 1949 ntBASIC18.62■□□□□ 0.57
CDX2Q99626 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDX2Q99626 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.62■□□□□ 0.57
CDX2Q99626 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CDX2Q99626 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 AC002056.1-201ENST00000395613 760 ntBASIC18.61■□□□□ 0.57
CDX2Q99626 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 GPS2P2-201ENST00000430745 888 ntBASIC18.61■□□□□ 0.57
CDX2Q99626 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.61■□□□□ 0.57
CDX2Q99626 HILS1-202ENST00000545329 423 ntBASIC18.61■□□□□ 0.57
CDX2Q99626 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.61■□□□□ 0.57
CDX2Q99626 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX2Q99626 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms